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SCNpilot_cont_300_bf_scaffold_6496_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_6496_curated_1
Lechevalieria aerocolonigenes, Lechevalieria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(171..560)
DNA (390bp) protein (130aa)
cysteine transferase n=1 Tax=Methylobacter marinus RepID=UPI00036DBCD7
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:KJK33155.1}; TaxID=68170 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia aerocolonigenes); (Saccharothrix aerocolonigenes).;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_cont_300_bf_scaffold_6496_curated_2
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(591..1373)
DNA (783bp) protein (261aa)
squalene--hopene cyclase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA101
Squalene-hopene cyclase {ECO:0000313|EMBL:EHM03396.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
squalene-hopene cyclase
SCNpilot_cont_300_bf_scaffold_6496_curated_3
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1373..2470)
DNA (1098bp) protein (366aa)
squalene--hopene cyclase (EC:5.4.99.17); K06045 squalene-hopene cyclase [EC:5.4.99.17 4.2.1.129]
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002E7E5E4
Squalene-hopene cyclase {ECO:0000313|EMBL:EHM03396.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
SCNpilot_cont_300_bf_scaffold_6496_curated_4
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2502..3758)
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CCB24
squalene-associated FAD-dependent desaturase
Squalene-associated FAD-dependent desaturase {ECO:0000313|EMBL:AGH49562.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_6496_curated_5
unknown

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comp(3755..3901)
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_6496_curated_6
unknown

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4318..4689
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_6496_curated_7
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4581..5462)
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003726BE2
squalene synthase HpnC
Squalene synthase HpnC {ECO:0000313|EMBL:AGH49564.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_6496_curated_8
Moorea producens, Moorea, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(5459..6547)
DNA (1089bp) protein (363aa)
Hopene-associated glycosyltransferase HpnB n=1 Tax=Moorea producens 3L RepID=F4Y2C7_9CYAN
Hopene-associated glycosyltransferase HpnB {ECO:0000313|EMBL:EGJ28771.1}; TaxID=489825 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Moorea.;" source="Moorea producens 3L.;"
hopene-associated glycosyltransferase HpnB
SCNpilot_cont_300_bf_scaffold_6496_curated_9
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6544..7446)
DNA (903bp) protein (301aa)
hopanoid-associated sugar epimerase; K00091 dihydroflavonol-4-reductase [EC:1.1.1.219]
Hopanoid-associated sugar epimerase n=1 Tax=Burkholderia graminis C4D1M RepID=B1FUK1_9BURK
Hopanoid-associated sugar epimerase {ECO:0000313|EMBL:EDT12311.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
SCNpilot_cont_300_bf_scaffold_6496_curated_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7542..8018)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S0P7_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO55487.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
SCNpilot_cont_300_bf_scaffold_6496_curated_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8435..9334)
DNA (900bp) protein (300aa)
hopanoid biosynthesis associated protein HpnK n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B790ED
Cellobiose phosphotransferase system celC {ECO:0000313|EMBL:GAO55488.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hopanoid biosynthesis associated protein HpnK
SCNpilot_cont_300_bf_scaffold_6496_curated_12
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9331..10761)
DNA (1431bp) protein (477aa)
Hopanoid biosynthesis associated radical SAM protein HpnJ n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y030_9PROT
Hopanoid biosynthesis associated radical SAM protein HpnJ {ECO:0000313|EMBL:EGY01126.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
hopanoid biosynthesis associated radical SAM protein HpnJ
SCNpilot_cont_300_bf_scaffold_6496_curated_13
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10771..11910)
DNA (1140bp) protein (380aa)
hopanoid biosynthesis associated glycosyl transferase protein HpnI; K00720 ceramide glucosyltransferase [EC:2.4.1.80]
Hopanoid biosynthesis associated glycosyl transferase protein HpnI n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y3F1_9RHIZ
Hopanoid biosynthesis associated glycosyl transferase protein HpnI {ECO:0000313|EMBL:EMS41416.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
SCNpilot_cont_300_bf_scaffold_6496_curated_14
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12218..15043)
DNA (2826bp) protein (942aa)
(glutamate--ammonia-ligase) adenylyltransferase; K00982 glutamate-ammonia-ligase adenylyltransferase [EC:2.7.7.42]
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015000}; EC=2.7.7.42 {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015004};; Glutamine-synthase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; [Glutamate--ammonia-ligase] adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / D
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRN6_PARL1
SCNpilot_cont_300_bf_scaffold_6496_curated_15
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15108..16460)
DNA (1353bp) protein (451aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRN5_PARL1
integral membrane sensor signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_6496_curated_16
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16447..17124)
DNA (678bp) protein (226aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRN4_PARL1
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABS62567.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_6496_curated_17
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17178..17684)
DNA (507bp) protein (169aa)
Periplasmic serine protease, Do/DeqQ family n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0BU95_RHILV
Periplasmic serine protease, Do/DeqQ family {ECO:0000313|EMBL:EJC70045.1}; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
Displaying 17 items

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