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SCNpilot_cont_300_bf_scaffold_2755_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2755_curated_1
uncultured Rhizobiales bacterium HF4000_48A13, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1094
DNA (1092bp) protein (364aa)
acyl-CoA synthetase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II n=1 Tax=uncultured Rhizobiales bacterium HF4000_48A13 RepID=E0XZ37_9RHIZ
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II {ECO:0000313|EMBL:ADI19678.1}; TaxID=710781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; environmental samples.;" source="uncultured Rhizobiales bacterium HF4000_48A13.;"
SCNpilot_cont_300_bf_scaffold_2755_curated_2
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1162..1800
DNA (639bp) protein (213aa)
Transcriptional regulator, TetR family n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RG43_PHEZH
transcriptional regulator, TetR family
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ACG77167.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_2755_curated_3
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1797..2786
DNA (990bp) protein (330aa)
2-nitropropane dioxygenase; K00459 nitronate monooxygenase [EC:1.13.12.16]
2-nitropropane dioxygenase NPD n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VM83_CAUST
2-nitropropane dioxygenase NPD {ECO:0000313|EMBL:ADG11606.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_2755_curated_4
unknown

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comp(3442..3978)
DNA (537bp) protein (179aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2755_curated_5
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4835..6628)
DNA (1794bp) protein (598aa)
Tat pathway signal protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B317DB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ70730.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_2755_curated_6
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6875..9193)
DNA (2319bp) protein (773aa)
Outer membrane salicin receptor n=1 Tax=Azospirillum amazonense Y2 RepID=G1XXA2_9PROT
Outer membrane salicin receptor {ECO:0000313|EMBL:EGY02108.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
TonB-dependent receptor-like protein
SCNpilot_cont_300_bf_scaffold_2755_curated_7
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(9447..10154)
DNA (708bp) protein (236aa)
Transcriptional regulator, TetR family n=1 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A3T2_THECD
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ACY97985.1}; TaxID=471852 species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
SCNpilot_cont_300_bf_scaffold_2755_curated_8
unknown

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10344..10853
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Fischerella sp. PCC 9339 RepID=UPI0002F6CF7E
SCNpilot_cont_300_bf_scaffold_2755_curated_9
marine actinobacterium MedAcidi-G3, Actinobacteria, Actinobacteria, Bacteria

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10865..11806
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Sporichthya polymorpha RepID=UPI00035CD291
Uncharacterized protein {ECO:0000313|EMBL:KIE53233.1}; TaxID=1550402 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G3.;"
cyclase
SCNpilot_cont_300_bf_scaffold_2755_curated_10
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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11827..12696
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FJU2_SORC5
Alkanal monooxygenase alpha chain {ECO:0000313|EMBL:KFE69662.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2755_curated_11
Amycolatopsis decaplanina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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12719..12973
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI0003608B23
Uncharacterized protein {ECO:0000313|EMBL:EME63359.1}; TaxID=1284240 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis decaplanina DSM 44594.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2755_curated_12
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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13382..13999
DNA (618bp) protein (206aa)
30S ribosomal protein S4 n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EJF2_9RHOB
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
SCNpilot_cont_300_bf_scaffold_2755_curated_13
Emiliania huxleyi, Emiliania, Isochrysidales, Eukaryota

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14064..14690
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Emiliania huxleyi CCMP1516 RepID=R1CJN4_EMIHU
Uncharacterized protein {ECO:0000313|EMBL:EOD23098.1, ECO:0000313|EnsemblProtists:EOD23098}; TaxID=280463 species="Eukaryota; Haptophyceae; Isochrysidales; Noelaerhabdaceae; Emiliania.;" source="Emiliania huxleyi CCMP1516.;"
glutathione S-transferase domain-containing protein; K11208 GST-like protein
SCNpilot_cont_300_bf_scaffold_2755_curated_14
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14687..15016)
DNA (330bp) protein (110aa)
Glutaredoxin n=1 Tax=Azospirillum amazonense Y2 RepID=G1XZY3_9PROT
glutaredoxin-like protein; K07390 monothiol glutaredoxin
Glutaredoxin {ECO:0000256|PIRNR:PIRNR005894}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
SCNpilot_cont_300_bf_scaffold_2755_curated_15
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15090..15323)
DNA (234bp) protein (78aa)
BolA-like protein n=2 Tax=Rhodospirillum rubrum RepID=G2TAZ1_RHORU
BolA-like protein
BolA-like protein {ECO:0000313|EMBL:ABC21511.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCNpilot_cont_300_bf_scaffold_2755_curated_16
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15336..16892)
DNA (1557bp) protein (519aa)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420};; Formylglycinamide ribonucleotide amidotransferase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; Glutamine amidotransferase PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Phosphoribosylformylglycinamidine synthase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteri
phosphoribosylformylglycinamidine synthase II (EC:6.3.5.3); K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
Phosphoribosylformylglycinamidine synthase 2 n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTG9_9RHIZ
SCNpilot_cont_300_bf_scaffold_2755_curated_17
alpha proteobacterium JLT2015, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16912..17529)
DNA (618bp) protein (206aa)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420};; Formylglycinamide ribonucleotide amidotransferase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; Glutamine amidotransferase PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Phosphoribosylformylglycinamidine synthase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacter
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3); K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
Phosphoribosylformylglycinamidine synthase 2 n=1 Tax=alpha proteobacterium JLT2015 RepID=M2SAQ0_9PROT
SCNpilot_cont_300_bf_scaffold_2755_curated_18
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17699..18340)
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI00036159CB
YceI family protein
YceI family protein {ECO:0000313|EMBL:ABZ73148.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_2755_curated_19
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18391..19059)
DNA (669bp) protein (223aa)
purQ; phosphoribosylformylglycinamidine synthase I (EC:6.3.5.3); K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
Phosphoribosylformylglycinamidine synthase 1 n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D212_SPHYA
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
SCNpilot_cont_300_bf_scaffold_2755_curated_20
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19235..19477)
DNA (243bp) protein (81aa)
purS; phosphoribosylformylglycinamidine synthase, PurS protein; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
Phosphoribosylformylglycinamidine synthase subunit PurS {ECO:0000256|HAMAP-Rule:MF_01926}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_01926};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_01926};; Formylglycinamide ribonucleotide amidotransferase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; Phosphoribosylformylglycinamidine synthase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source=
Phosphoribosylformylglycinamidine synthase, PurS protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IWP7_RHOCS
SCNpilot_cont_300_bf_scaffold_2755_curated_21
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19474..20238)
DNA (765bp) protein (255aa)
phosphoribosylaminoimidazole-succinocarboxamide synthase; K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IMS2_XANP2
SCNpilot_cont_300_bf_scaffold_2755_curated_22
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20464..20796
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4R8F8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESR22451.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
HpcH/HpaI aldolase
SCNpilot_cont_300_bf_scaffold_2755_curated_23
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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20820..21677
DNA (858bp) protein (286aa)
quinoprotein glucose dehydrogenase; K00117 quinoprotein glucose dehydrogenase [EC:1.1.5.2]
Quinoprotein glucose dehydrogenase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWB8_PARL1
Quinoprotein glucose dehydrogenase {ECO:0000313|EMBL:GAK44701.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Displaying 23 items

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