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SCNpilot_cont_300_bf_scaffold_1811_curated

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1811_curated_1
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1641
DNA (1641bp) protein (547aa)
AMP-dependent synthetase and ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
AMP-dependent synthetase and ligase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UMH7_METS4
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ACA17128.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_300_bf_scaffold_1811_curated_2
Nocardia brasiliensis, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1854..2294
DNA (441bp) protein (147aa)
DNA binding domain-containing protein n=1 Tax=Nocardia brasiliensis ATCC 700358 RepID=K0EUJ3_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:GAJ81384.1}; TaxID=1206724 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia brasiliensis NBRC 14402.;"
DNA binding domain-containing protein
SCNpilot_cont_300_bf_scaffold_1811_curated_3
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2291..3139
DNA (849bp) protein (283aa)
alpha/beta hydrolase n=1 Tax=Actinopolymorpha alba RepID=UPI00036A434F
Alpha/beta hydrolase {ECO:0000313|EMBL:ETK37863.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
alpha/beta hydrolase fold protein
SCNpilot_cont_300_bf_scaffold_1811_curated_4
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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3238..4506
DNA (1269bp) protein (423aa)
MFS transporter n=1 Tax=Spirosoma panaciterrae RepID=UPI0003636CF3
Major facilitator transporter {ECO:0000313|EMBL:GAK45845.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
major facilitator superfamily protein; K08151 MFS transporter, DHA1 family, tetracycline resistance protein
SCNpilot_cont_300_bf_scaffold_1811_curated_5

Not on your lists

comp(4551..4724)
DNA (174bp) protein (58aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00035CE96D
Marine sediment metagenome DNA, contig: S01H1_S26875 {ECO:0000313|EMBL:GAG34545.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1811_curated_6
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4891..5097
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NDQ1_ERYLH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC62190.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
SCNpilot_cont_300_bf_scaffold_1811_curated_7
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5123..5854)
DNA (732bp) protein (244aa)
Diguanylate cyclase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUW0_PARL1
GGDEF family protein {ECO:0000313|EMBL:CDO58942.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
diguanylate cyclase
SCNpilot_cont_300_bf_scaffold_1811_curated_8
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6040..6540
DNA (501bp) protein (167aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
phosphoribosylaminoimidazole carboxylase catalytic subunit; K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003767335
SCNpilot_cont_300_bf_scaffold_1811_curated_9
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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6537..7634
DNA (1098bp) protein (366aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="
phosphoribosylaminoimidazole carboxylase ATPase subunit; K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036BD947
SCNpilot_cont_300_bf_scaffold_1811_curated_10
Asticcacaulis sp. AC460, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7820..8824
DNA (1005bp) protein (335aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=1282360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC460.;"
Aspartate-semialdehyde dehydrogenase n=1 Tax=Asticcacaulis sp. AC460 RepID=V4PH25_9CAUL
aspartate-semialdehyde dehydrogenase
SCNpilot_cont_300_bf_scaffold_1811_curated_11
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8821..9504)
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037A68F5
RpsU-divergently transcribed {ECO:0000313|EMBL:KGB56193.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
rpsU-divergently transcribed protein
SCNpilot_cont_300_bf_scaffold_1811_curated_12
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9501..10136)
DNA (636bp) protein (212aa)
peptide deformylase; K01462 peptide deformylase [EC:3.5.1.88]
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Peptide deformylase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUU9_PARL1
SCNpilot_cont_300_bf_scaffold_1811_curated_13
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10223..10435
DNA (213bp) protein (71aa)
30S ribosomal protein S21 n=1 Tax=Methylopila sp. M107 RepID=UPI00036D88FA
rpsU; 30S ribosomal protein S21
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_300_bf_scaffold_1811_curated_14
unknown

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10692..11246
DNA (555bp) protein (185aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1811_curated_15
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11308..12825)
DNA (1518bp) protein (506aa)
Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TIF7_PARBH
hypothetical protein; K01992 ABC-2 type transport system permease protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
SCNpilot_cont_300_bf_scaffold_1811_curated_16

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comp(12822..13745)
DNA (924bp) protein (308aa)
ABC transporter, ATP-binding protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BXF3_HYPNA
Uncharacterized protein {ECO:0000313|EMBL:KKN99219.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ABC transporter ATP-binding protein; K01990 ABC-2 type transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_1811_curated_17
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13869..15452
DNA (1584bp) protein (528aa)
Ferredoxin domain protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8U4G3_9PROT
Ferredoxin domain protein {ECO:0000313|EMBL:EDP61023.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1811_curated_18
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15473..16138)
DNA (666bp) protein (222aa)
UPI0003CFB7AD related cluster n=1 Tax=unknown RepID=UPI0003CFB7AD
Cation transporter {ECO:0000313|EMBL:ESZ87748.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
cation diffusion facilitator family transporter
SCNpilot_cont_300_bf_scaffold_1811_curated_19
unknown

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16232..16480
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1811_curated_20
unknown

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comp(16541..16915)
DNA (375bp) protein (125aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1811_curated_21
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17219..18106
DNA (888bp) protein (296aa)
Taurine dioxygenase {ECO:0000313|EMBL:KGM33804.1}; EC=1.14.11.17 {ECO:0000313|EMBL:KGM33804.1};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
alpha-ketoglutarate-dependent taurine dioxygenase; K03119 taurine dioxygenase [EC:1.14.11.17]
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00036A3C9F
SCNpilot_cont_300_bf_scaffold_1811_curated_22
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18119..18784)
DNA (666bp) protein (222aa)
DSBA oxidoreductase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXQ6_PARL1
DSBA oxidoreductase {ECO:0000313|EMBL:GAK43945.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
DSBA oxidoreductase
SCNpilot_cont_300_bf_scaffold_1811_curated_23
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18910..19662
DNA (753bp) protein (251aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXQ7_PARL1
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABS64690.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_1811_curated_24
unknown

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comp(19680..20117)
DNA (438bp) protein (146aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1811_curated_25
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20172..21290
DNA (1119bp) protein (373aa)
L-carnitine dehydratase/bile acid-inducible protein F; K01796 alpha-methylacyl-CoA racemase [EC:5.1.99.4]
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXR2_PARL1
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ABS64695.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_1811_curated_26
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21304..22038
DNA (735bp) protein (245aa)
phosphoglycerate mutase; K01834 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.1]
Phosphoglycerate mutase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXR3_PARL1
Phosphoglycerate mutase {ECO:0000313|EMBL:GAK43940.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
SCNpilot_cont_300_bf_scaffold_1811_curated_27
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22051..22752)
DNA (702bp) protein (234aa)
Putative aspartyl protease n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T4A2_CAUSK
putative aspartyl protease; K06985 aspartyl protease family protein
Putative aspartyl protease {ECO:0000313|EMBL:ABZ69402.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_1811_curated_28
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22843..23397)
DNA (555bp) protein (185aa)
Putative nuclease n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z630_SPHJU
putative nuclease
Putative nuclease {ECO:0000313|EMBL:BAI98062.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
SCNpilot_cont_300_bf_scaffold_1811_curated_29
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(23475..23663)
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI0003772A5B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGS22239.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_cont_300_bf_scaffold_1811_curated_30
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(23699..24064)
DNA (366bp) protein (122aa)
Lactoylglutathione lyase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RGK4_PHEZH
lactoylglutathione lyase
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
Displaying items 1-30 of 59 in total

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