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SCNpilot_cont_300_bf_scaffold_2410_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2410_curated_1
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..786)
DNA (786bp) protein (262aa)
Peptidase M23B n=1 Tax=alpha proteobacterium BAL199 RepID=A8U3C5_9PROT
Peptidase M23B {ECO:0000313|EMBL:EDP61316.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
peptidase M23B
SCNpilot_cont_300_bf_scaffold_2410_curated_2
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(805..1032)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IF69_XANP2
hypothetical protein
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_cont_300_bf_scaffold_2410_curated_3
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1079..2497)
DNA (1419bp) protein (473aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
xseA; exodeoxyribonuclease VII large subunit; K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 large subunit n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IF68_XANP2
SCNpilot_cont_300_bf_scaffold_2410_curated_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2571..3848
DNA (1278bp) protein (426aa)
phosphoribosylamine--glycine ligase; K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13]
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
Phosphoribosylamine--glycine ligase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07HQ2_RHOP5
SCNpilot_cont_300_bf_scaffold_2410_curated_5
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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3912..5006
DNA (1095bp) protein (365aa)
Aminoglycoside phosphotransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQQ8_PARL1
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:GAK44984.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
aminoglycoside phosphotransferase; K06979
SCNpilot_cont_300_bf_scaffold_2410_curated_6
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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5151..6215
DNA (1065bp) protein (355aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQT8_PARL1
PAS/PAC sensor signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_2410_curated_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6354..6716
DNA (363bp) protein (121aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQT8_PARL1
PAS/PAC sensor signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_2410_curated_8
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6793..8034)
DNA (1242bp) protein (414aa)
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:CDO60389.1}; EC=1.3.8.7 {ECO:0000313|EMBL:CDO60389.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
PREDICTED: acyl-CoA dehydrogenase family member 10-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C119B4
acyl-CoA dehydrogenase domain-containing protein
SCNpilot_cont_300_bf_scaffold_2410_curated_9
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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8179..8799
DNA (621bp) protein (207aa)
Phosphoesterase PA-phosphatase related id=3729048 bin=GWC2_Syntrophus__56_31 species=Chlorobium limicola genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
PA-phosphatase-like phosphoesterase
Tax=GWC2_Syntrophus_56_31_curated
SCNpilot_cont_300_bf_scaffold_2410_curated_10
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8822..9571
DNA (750bp) protein (250aa)
Integral membrane protein TerC n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SSH5_NITWN
integral membrane protein TerC
Membrane protein {ECO:0000313|EMBL:KJB94897.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
SCNpilot_cont_300_bf_scaffold_2410_curated_11
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9578..10984)
DNA (1407bp) protein (469aa)
Major facilitator superfamily MFS_1 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWD6_PARL1
MFS/sugar transport family protein {ECO:0000313|EMBL:CDO58444.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
major facilitator superfamily transporter
SCNpilot_cont_300_bf_scaffold_2410_curated_12

Not on your lists

comp(11736..12167)
DNA (432bp) protein (144aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1447233 species="Bacteria; environmental samples.;" source="uncultured bacterium 12AC_lac13.;"
CMP/dCMP deaminase zinc-binding n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQT5_PARL1
zinc-binding CMP/dCMP deaminase
SCNpilot_cont_300_bf_scaffold_2410_curated_13

Not on your lists

12817..13326
DNA (510bp) protein (170aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1447233 species="Bacteria; environmental samples.;" source="uncultured bacterium 12AC_lac13.;"
16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
hypothetical protein, partial n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036A388C
SCNpilot_cont_300_bf_scaffold_2410_curated_14
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13395..13865)
DNA (471bp) protein (157aa)
aldehyde-activating protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036AFEAA
Uncharacterized protein {ECO:0000313|EMBL:KEC82014.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2410_curated_15
unknown

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14625..15242
DNA (618bp) protein (206aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2410_curated_16
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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15239..15994
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI0003745136
Uncharacterized protein {ECO:0000313|EMBL:KGI78840.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2410_curated_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16032..16847
DNA (816bp) protein (272aa)
N-acetyltransferase; K00622 arylamine N-acetyltransferase [EC:2.3.1.5]
N-acetyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9S6_NOVAD
N-acetyltransferase {ECO:0000313|EMBL:CDX26105.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_cont_300_bf_scaffold_2410_curated_18
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16991..17749)
DNA (759bp) protein (253aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A1Y8_STAND
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:GAK46134.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_2410_curated_19
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17801..18685)
DNA (885bp) protein (295aa)
Cation diffusion facilitator family transporter n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HR81_PARL1
cation diffusion facilitator family transporter
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
Displaying 19 items

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