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SCNpilot_cont_300_bf_scaffold_4255_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_4255_curated_1
unknown

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comp(2..217)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4255_curated_2
unknown

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326..514
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4255_curated_3
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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684..1856
DNA (1173bp) protein (391aa)
isovaleryl-CoA dehydrogenase; K00253 isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
Isovaleryl-CoA dehydrogenase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I9U5_AZOC5
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:BAF88831.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_4255_curated_4
unknown

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2040..2822
DNA (783bp) protein (261aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4255_curated_5
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2819..3118)
DNA (300bp) protein (100aa)
Addiction module toxin, RelE/StbE family n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S2F5_9BRAD
Addiction module toxin, RelE/StbE family {ECO:0000313|EMBL:CCD88382.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
RelE/StbE family addiction module toxin
SCNpilot_cont_300_bf_scaffold_4255_curated_6
unknown

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comp(3122..3403)
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4255_curated_7
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3470..4198
DNA (729bp) protein (243aa)
Glutathione S-transferase-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYQ9_9SPHN
glutathione S-transferase
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_cont_300_bf_scaffold_4255_curated_8
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4195..5376
DNA (1182bp) protein (394aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:AIB15082.1}; EC=2.3.1.9 {ECO:0000313|EMBL:AIB15082.1};; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
Acetyl-CoA acetyltransferase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TNS8_TISMK
acetyl-CoA acetyltransferase
SCNpilot_cont_300_bf_scaffold_4255_curated_9
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5771..7525
DNA (1755bp) protein (585aa)
propionyl-CoA carboxylase; K01969 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C111FE
Acetyl-CoA carboxylase, carboxyltransferase component (Subunits alpha and beta) {ECO:0000313|EMBL:ENZ81630.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
SCNpilot_cont_300_bf_scaffold_4255_curated_10
Pseudoalteromonas spongiae, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8286..8675
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Pseudoalteromonas spongiae UST010723-006 RepID=U1LA49_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ERG55374.1}; TaxID=1117319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas spongiae UST010723-006.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_4255_curated_11
unknown

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8864..9022
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4255_curated_12
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9170..11077
DNA (1908bp) protein (636aa)
carbamoyl-phosphate synthase L chain ATP-binding; K01968 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
Carbamoyl-phosphate synthase L chain, N-terminal domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WYE8_9SPHN
DNA, contig: SP607 {ECO:0000313|EMBL:GAN12236.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_cont_300_bf_scaffold_4255_curated_13
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11083..11517
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00035CF833
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS64397.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_4255_curated_14
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11583..12428)
DNA (846bp) protein (282aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00094309};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
panC; pantoate--beta-alanine ligase; K01918 pantoate--beta-alanine ligase [EC:6.3.2.1]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FE2D65
SCNpilot_cont_300_bf_scaffold_4255_curated_15
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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12498..15596
DNA (3099bp) protein (1033aa)
bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12 1.5.99.8); K13821 proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.99.8 1.5.1.12]
Delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase {ECO:0000313|EMBL:ABI60091.1}; EC=1.2.1.88 {ECO:0000313|EMBL:ABI60091.1};; EC=1.5.99.8 {ECO:0000313|EMBL:ABI60091.1};; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
Delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AEZ1_NITEC
SCNpilot_cont_300_bf_scaffold_4255_curated_16
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15638..16348
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JCB5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE72447.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_4255_curated_17
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16349..17074
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI0003724F1D
Heat shock protein DnaJ-like {ECO:0000313|EMBL:EAV42802.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
molecular chaperone DnaJ
SCNpilot_cont_300_bf_scaffold_4255_curated_18
unknown

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comp(17244..17351)
DNA (108bp) protein (36aa)

This feature has no annotations

Displaying 18 items

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