ggKbase home page

SCNpilot_cont_300_bf_scaffold_8322_curated

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_8322_curated_1
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1007
DNA (1005bp) protein (335aa)
hypothetical protein; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90]
Geranylgeranyl pyrophosphate synthase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JPA2_9PROT
Geranylgeranyl pyrophosphate synthase {ECO:0000313|EMBL:EKE72289.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
SCNpilot_cont_300_bf_scaffold_8322_curated_2
unknown

Not on your lists

comp(1241..1942)
DNA (702bp) protein (234aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_8322_curated_3
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2112..3032)
DNA (921bp) protein (307aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Oceanibaculum indicum P24 RepID=K2K6R5_9PROT
SCNpilot_cont_300_bf_scaffold_8322_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2983..4542)
DNA (1560bp) protein (520aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PP11_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41230.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_8322_curated_5
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4656..6320)
DNA (1665bp) protein (555aa)
electron-transferring-flavoprotein dehydrogenase; K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
Electron-transferring-flavoprotein dehydrogenase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HR09_PARL1
Electron-transferring-flavoprotein dehydrogenase {ECO:0000313|EMBL:GAK45055.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
SCNpilot_cont_300_bf_scaffold_8322_curated_6
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6465..7352
DNA (888bp) protein (296aa)
DNA polymerase n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZYG4_9BRAD
DNA polymerase
DNA polymerase {ECO:0000313|EMBL:BAM91490.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_cont_300_bf_scaffold_8322_curated_7
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7538..8071
DNA (534bp) protein (178aa)
molybdopterin biosynthesis protein B n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D8F304
Molybdenum cofactor biosynthesis protein B {ECO:0000256|PIRNR:PIRNR006443}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
molybdenum cofactor biosynthesis protein B; K03638 molybdenum cofactor biosynthesis protein B
SCNpilot_cont_300_bf_scaffold_8322_curated_8
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8115..8753)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y978_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB74693.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_300_bf_scaffold_8322_curated_9
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9007..10194)
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q221A5_RHOFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD68398.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCNpilot_cont_300_bf_scaffold_8322_curated_10
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

10424..11557
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. 217 RepID=A3W746_9RHOB
BNR/Asp-box repeat-containing protein
Tax=RBG_16_Actinobacteria_67_10_curated
SCNpilot_cont_300_bf_scaffold_8322_curated_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

11554..11829
DNA (276bp) protein (92aa)
UBA/THIF-type NAD/FAD binding protein id=14626398 bin=bin7_NC10_sister species=Actinopolymorpha alba genus=Actinopolymorpha taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
MoaD family protein; K03636 molybdopterin synthase sulfur carrier subunit
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
SCNpilot_cont_300_bf_scaffold_8322_curated_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11910..12272
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TVJ3_9BRAD
radical SAM family protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying 12 items

View Taxonomy