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SCNpilot_cont_300_bf_scaffold_1861_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1861_curated_1
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1483)
DNA (1482bp) protein (494aa)
ribonuclease; K08300 ribonuclease E [EC:3.1.26.12]
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
primase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI0003628617
SCNpilot_cont_300_bf_scaffold_1861_curated_2
Sulfitobacter donghicola, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1550..2164)
DNA (615bp) protein (205aa)
ribonuclease; K08300 ribonuclease E [EC:3.1.26.12]
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=1300350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565.;"
Ribonuclease E n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LRP5_DINSH
SCNpilot_cont_300_bf_scaffold_1861_curated_3
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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2608..3969
DNA (1362bp) protein (454aa)
N-acetylmuramoyl-L-alanine amidase; K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
cell wall hydrolase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B3037C
CBM50-containing protein|CBM50 {ECO:0000313|EMBL:CDO60917.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
SCNpilot_cont_300_bf_scaffold_1861_curated_4
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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4059..6485
DNA (2427bp) protein (809aa)
Penicillin-binding protein 1A (EC:2.4.1.129); K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]
Penicillin-binding protein 1A n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SMT3_RHOPH
1A family penicillin-binding protein {ECO:0000313|EMBL:GAK44627.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
SCNpilot_cont_300_bf_scaffold_1861_curated_5
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6589..6966
DNA (378bp) protein (126aa)
periplasmic binding protein TonB n=1 Tax=Janthinobacterium lividum RepID=UPI000288C45E
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KHA77292.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
TonB family protein; K03832 periplasmic protein TonB
SCNpilot_cont_300_bf_scaffold_1861_curated_6
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7246..8184
DNA (939bp) protein (313aa)
peptide chain release factor 2 n=1 Tax=Hoeflea sp. 108 RepID=UPI00037BEB74
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
peptide chain release factor 2; K02836 peptide chain release factor 2 rbh
SCNpilot_cont_300_bf_scaffold_1861_curated_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8249..8800)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HY95_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS64878.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_1861_curated_8
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8787..10307)
DNA (1521bp) protein (507aa)
Peptidase M23B n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HY94_PARL1
Membrane proteins related to metalloendopeptidases {ECO:0000313|EMBL:CDO60921.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
peptidase M23B
SCNpilot_cont_300_bf_scaffold_1861_curated_9
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10314..10715)
DNA (402bp) protein (134aa)
Thiol peroxidase, Bcp-type {ECO:0000313|EMBL:CDO60923.1}; EC=1.11.1.15 {ECO:0000313|EMBL:CDO60923.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
alkyl hydroperoxide reductase; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
PREDICTED: putative peroxiredoxin Q, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C12CE6
SCNpilot_cont_300_bf_scaffold_1861_curated_10
unknown

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comp(10769..11419)
DNA (651bp) protein (217aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1861_curated_11
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

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11817..13058
DNA (1242bp) protein (414aa)
Putative uncharacterized protein n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0AQ38_MARMM
Uncharacterized protein {ECO:0000313|EMBL:KIF25964.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
hypothetical protein
Displaying 11 items

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