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SCNpilot_cont_300_bf_scaffold_1272_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1272_curated_1
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50..2635)
DNA (2586bp) protein (862aa)
UPI0003CEE418 related cluster n=1 Tax=unknown RepID=UPI0003CEE418
Methylase {ECO:0000313|EMBL:ESY71796.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
methylase/helicase
SCNpilot_cont_300_bf_scaffold_1272_curated_2
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2849..4978)
DNA (2130bp) protein (710aa)
ParB domain-containing protein nuclease n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B9V5_9RHIZ
ParB domain-containing protein nuclease
ParB domain-containing protein nuclease {ECO:0000313|EMBL:AGK59803.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_300_bf_scaffold_1272_curated_3
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5054..6535)
DNA (1482bp) protein (494aa)
ID466 n=1 Tax=Bradyrhizobium japonicum RepID=Q9AN79_BRAJP
exonuclease SbcC rbh
SbcC exonuclease {ECO:0000313|EMBL:CAD89361.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
SCNpilot_cont_300_bf_scaffold_1272_curated_4
unknown

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6613..6924
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1272_curated_5
unknown

Not on your lists

7015..7137
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1272_curated_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7455..7904)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VEG4_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJC71696.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1272_curated_7
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8653..10074)
DNA (1422bp) protein (474aa)
Exodeoxyribonuclease I {ECO:0000313|EMBL:EFI53103.1}; EC=3.1.11.1 {ECO:0000313|EMBL:EFI53103.1};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
exodeoxyribonuclease I; K01141 exodeoxyribonuclease I [EC:3.1.11.1]
exodeoxyribonuclease I n=1 Tax=Hoeflea sp. 108 RepID=UPI00036B9C88
SCNpilot_cont_300_bf_scaffold_1272_curated_8
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10075..10602)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V074_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI53104.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1272_curated_9
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10599..10952)
DNA (354bp) protein (118aa)
Transcriptional regulator, XRE family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V075_9BRAD
Transcriptional regulator, XRE family {ECO:0000313|EMBL:EFI53105.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
XRE family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1272_curated_10
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11118..11339
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VTF6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJN03450.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1272_curated_11
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11421..12674
DNA (1254bp) protein (418aa)
Uncharacterized protein n=2 Tax=Bradyrhizobium RepID=G7DBK7_BRAJP
hypothetical protein
Blr0072 protein {ECO:0000313|EMBL:BAC45337.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_cont_300_bf_scaffold_1272_curated_12
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12683..13132
DNA (450bp) protein (150aa)
Uncharacterized protein n=2 Tax=Bradyrhizobium RepID=G7DBK8_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL05378.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_300_bf_scaffold_1272_curated_13
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13125..14252
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DBK9_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL05379.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_300_bf_scaffold_1272_curated_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14754..15629)
DNA (876bp) protein (292aa)
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HMC5_9FIRM
rfbA; glucose-1-phosphate thymidylyltransferase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1272_curated_15
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15643..16134
DNA (492bp) protein (164aa)
DNA-binding protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B46EFF
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1272_curated_16
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16152..17048
DNA (897bp) protein (299aa)
metal ABC transporter substrate-binding protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI00030408AB
Mn2+/Zn2+ ABC transporter periplasmic protein; K02077 zinc/manganese transport system substrate-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1272_curated_17
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17057..17959)
DNA (903bp) protein (301aa)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
Bifunctional protein FolD n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=FOLD_AZOC5 rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1272_curated_18
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17952..18143)
DNA (192bp) protein (64aa)
UPF0235 protein PHAMO_30082 n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FU88_PHAMO
UPF0235 protein PHAMO_30082 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
hypothetical protein; K09131 hypothetical protein
SCNpilot_cont_300_bf_scaffold_1272_curated_19
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18273..18566)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AEJ0_AZOBR
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1272_curated_20
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18646..19305)
DNA (660bp) protein (220aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1272_curated_21
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19308..19562)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI000379A819
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1272_curated_22
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19609..20001)
DNA (393bp) protein (131aa)
endoribonuclease L-PSP; K07567 TdcF protein id=24386810 bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
endoribonuclease L-PSP; K07567 TdcF protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1272_curated_23
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20274..20936
DNA (663bp) protein (221aa)
hypothetical protein id=56168 bin=ACD43 species=ACD43 genus=ACD43 taxon_order=ACD43 taxon_class=ACD43 phylum=OD1 tax=ACD43 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1272_curated_24
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20943..22148)
DNA (1206bp) protein (402aa)
Putative Transmembrane efflux protein of the MFS type n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IEL1_BORPD
transmembrane efflux protein of the MFS type
Putative Transmembrane efflux protein of the MFS type {ECO:0000313|EMBL:CAP41771.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_cont_300_bf_scaffold_1272_curated_25
Photorhabdus luminescens, Photorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22255..22854
DNA (600bp) protein (200aa)
Complete genome; segment 4/17 n=1 Tax=Photorhabdus luminescens subsp. laumondii (strain TT01) RepID=Q7N800_PHOLL
hypothetical protein
Complete genome; segment 4/17 {ECO:0000313|EMBL:CAE13244.1}; TaxID=243265 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Photorhabdus.;" source="Photorhabdus luminescens subsp. laumondii (strain TT01).;"
SCNpilot_cont_300_bf_scaffold_1272_curated_26
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22933..23508
DNA (576bp) protein (192aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying 26 items

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