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SCNpilot_cont_300_bf_scaffold_2001_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2001_curated_1
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..5511
DNA (5511bp) protein (1837aa)
Amino acid adenylation domain protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IHH5_BEII9
Amino acid adenylation domain protein {ECO:0000313|EMBL:ACB94496.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
amino acid adenylation domain-containing protein
SCNpilot_cont_300_bf_scaffold_2001_curated_2
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5521..7773
DNA (2253bp) protein (751aa)
N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase {ECO:0000313|EMBL:EUC13538.1}; EC=6.3.2.26 {ECO:0000313|EMBL:EUC13538.1};; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. BT03.;"
Non-ribosomal peptide synthase n=1 Tax=Burkholderia sp. BT03 RepID=J2HL58_9BURK
condensation domain-containing protein
SCNpilot_cont_300_bf_scaffold_2001_curated_3
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7770..8804
DNA (1035bp) protein (345aa)
Platelet-activating factor acetylhydrolase plasma/intracellular isoform II n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EPK9_METSB
Uncharacterized protein {ECO:0000313|EMBL:KHK92871.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2001_curated_4
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8741..9355)
DNA (615bp) protein (205aa)
4'-phosphopantetheinyl transferase; K06133 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
4'-phosphopantetheinyl transferase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MMH4_9RHIZ
4'-phosphopantetheinyl transferase {ECO:0000313|EMBL:EKF18447.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_cont_300_bf_scaffold_2001_curated_5
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9494..10531)
DNA (1038bp) protein (346aa)
Anti-sigma factor protein, FecR family n=3 Tax=Azotobacter vinelandii RepID=C1DIF1_AZOVD
FecR family anti-sigma factor protein; K07165 transmembrane sensor
Anti-sigma factor protein, FecR family {ECO:0000313|EMBL:AGK19260.1}; TaxID=1283331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii CA6.;"
SCNpilot_cont_300_bf_scaffold_2001_curated_6
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

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comp(10597..10950)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000369E006
hypothetical protein
Tax=RBG_16_Planctomycetes_55_9_curated
SCNpilot_cont_300_bf_scaffold_2001_curated_7
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11009..11905)
DNA (897bp) protein (299aa)
LysR family transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HRX6_9RHIZ
LysR family transcriptional regulator {ECO:0000313|EMBL:EHK56531.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2001_curated_8
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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12004..12396
DNA (393bp) protein (131aa)
Blr5558 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89IS6_BRADU
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2001_curated_9
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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12396..13313
DNA (918bp) protein (306aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HRX4_9RHIZ
pyridoxamine 5'-phosphate oxidase-like protein; K07006
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2001_curated_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(13324..13764)
DNA (441bp) protein (147aa)
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase id=4954846 bin=GWC2_Methylomirabilis_70_24 species=Burkholderia sp. H160 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
SCNpilot_cont_300_bf_scaffold_2001_curated_11
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13869..15320)
DNA (1452bp) protein (484aa)
glutamate synthase (NADH) small subunit (EC:1.4.1.14); K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14]
Glutamate synthase (NADH) small subunit n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V2W9_SPHWW
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2001_curated_12
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15389..16519)
DNA (1131bp) protein (377aa)
glutamate synthase (NADH) large subunit (EC:1.4.1.14); K00265 glutamate synthase (NADPH/NADH) large chain [EC:1.4.1.13 1.4.1.14]
Glutamate synthase (NADH) large subunit n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V2X0_SPHWW
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCNpilot_cont_300_bf_scaffold_2001_curated_13
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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16728..19979
DNA (3252bp) protein (1084aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EBS3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EHJ61206.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2001_curated_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20118..20402
DNA (285bp) protein (95aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2001_curated_15
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20445..22142)
DNA (1698bp) protein (566aa)
putA; bifunctional proline oxidoreductase/transcriptional repressor (EC:1.5.99.8)
Bifunctional proline oxidoreductase/transcriptional repressor n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QJ76_BORBO
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying 15 items

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