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SCNpilot_cont_300_bf_scaffold_2104_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2104_curated_1
Methylophilaceae bacterium 11, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..729
DNA (729bp) protein (243aa)
Putative uncharacterized protein n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1W4J6_9BURK
Putative methyltransferase {ECO:0000313|EMBL:EUJ10614.1}; Flags: Precursor;; TaxID=1101195 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium 11.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2104_curated_2
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(733..1164)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000362375C
zinc-binding CMP/dCMP deaminase protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2104_curated_3
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1342..2118
DNA (777bp) protein (259aa)
Glutamine amidotransferase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JSI1_9PROT
putative gamma-glutamyl-gamma-aminobutyrate hydrolase
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCNpilot_cont_300_bf_scaffold_2104_curated_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2115..2906
DNA (792bp) protein (264aa)
16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
Pseudouridine synthase n=1 Tax=Oceanibaculum indicum P24 RepID=K2IDM4_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2104_curated_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2948..3517
DNA (570bp) protein (190aa)
Putative methyltransferase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AJ34_AZOBR
putative methyltransferase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2104_curated_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3514..4128
DNA (615bp) protein (205aa)
phosphoglycerate mutase family protein; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Uncharacterized protein n=1 Tax=Aeromonas veronii AMC34 RepID=K1J1D9_9GAMM
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2104_curated_7
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4285..5685
DNA (1401bp) protein (467aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003630F61
putative efflux protein, MATE family
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2104_curated_8
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5978..6454)
DNA (477bp) protein (159aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2104_curated_9
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6451..8322)
DNA (1872bp) protein (624aa)
DNA mismatch repair protein MutL n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IXC7_RHOCS
mutL; DNA mismatch repair protein MutL; K03572 DNA mismatch repair protein MutL
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2104_curated_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8335..9657)
DNA (1323bp) protein (441aa)
glucose-6-phosphate isomerase; K01810 glucose-6-phosphate isomerase [EC:5.3.1.9]
Glucose-6-phosphate isomerase n=1 Tax=Oceanibaculum indicum P24 RepID=K2J5A0_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2104_curated_11
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9705..11024)
DNA (1320bp) protein (440aa)
peptidase M16 (EC:3.4.24.-)
Peptidase M16, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IXB5_RHOCS
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2104_curated_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11021..12391)
DNA (1371bp) protein (457aa)
Zn-dependent peptidase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2YB25_9PROT
putative Zn-dependent protease
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2104_curated_13
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12397..12978)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NSG3_AZOS1
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2104_curated_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13052..13534)
DNA (483bp) protein (161aa)
lspA; Lipoprotein signal peptidase II, LspA (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36]
Lipoprotein signal peptidase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IXB3_RHOCS
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2104_curated_15
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13545..16394)
DNA (2850bp) protein (950aa)
Isoleucine--tRNA ligase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AJG6_AZOBR
ileS; isoleucine tRNA synthetase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2104_curated_16
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16621..17253)
DNA (633bp) protein (211aa)
Blr6493 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89G54_BRADU
hypothetical protein
Blr6493 protein {ECO:0000313|EMBL:BAC51758.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_cont_300_bf_scaffold_2104_curated_17
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17368..18105
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000372E6AF
Transcriptional regulator {ECO:0000313|EMBL:KJC52957.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2104_curated_18
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18041..18976)
DNA (936bp) protein (312aa)
ribF; riboflavin biosynthesis protein RibF (EC:2.7.1.26 2.7.7.2); K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
Riboflavin biosynthesis protein RibF n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IXA9_RHOCS
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2104_curated_19
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18987..19217)
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003811ECF
MaoC domain-containing protein dehydratase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying 19 items

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