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SCNpilot_cont_300_bf_scaffold_684_curated

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Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_684_curated_1
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..292
DNA (291bp) protein (97aa)
Hydrolase, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ITY9_RHOCS
hydrolase
Hydrolase, putative {ECO:0000313|EMBL:ACI99525.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_cont_300_bf_scaffold_684_curated_2
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

289..969
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain PA1) RepID=A9VWT7_METEP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABY31314.1}; TaxID=419610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain PA1).;"
SCNpilot_cont_300_bf_scaffold_684_curated_3
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

994..1293
DNA (300bp) protein (100aa)
Uncharacterized protein n=3 Tax=Acidiphilium RepID=A5FUX5_ACICJ
hypothetical protein; K09948 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ79551.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
SCNpilot_cont_300_bf_scaffold_684_curated_4
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1406..1678
DNA (273bp) protein (91aa)
UPF0335 protein AZOBR_100079 n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AKD1_AZOBR
conserved protein of unknown function; putative coiled-coil domain
UPF0335 protein VY88_13670 {ECO:0000256|HAMAP-Rule:MF_00797}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
SCNpilot_cont_300_bf_scaffold_684_curated_5
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1808..2953
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A8I3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EHL95552.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_684_curated_6
Burkholderia sp. MSHR3999, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2956..3852)
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Pseudomonas pyrrocinia RepID=UPI00030801EF
KY49.ctg7180000000014_quiver, whole genome shotgun sequence {ECO:0000313|EMBL:KIP18302.1}; TaxID=1542965 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSHR3999.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_684_curated_7
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3878..4126)
DNA (249bp) protein (83aa)
NUDIX hydrolase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_684_curated_8
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4531..4701)
DNA (171bp) protein (57aa)
isocitrate dehydrogenase (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42]
Isocitrate dehydrogenase [NADP] n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QGU9_CATAD
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_684_curated_9
Brucella neotomae, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4940..5839
DNA (900bp) protein (300aa)
NADP-dependent isocitrate dehydrogenase n=3 Tax=Brucella RepID=C9VB01_BRUNE
NADP-dependent isocitrate dehydrogenase {ECO:0000313|EMBL:EEY04764.1}; TaxID=520456 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella neotomae 5K33.;"
icd; NADP-dependent isocitrate dehydrogenase
SCNpilot_cont_300_bf_scaffold_684_curated_10
Magnetospirillum sp. pMbN1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5761..7983)
DNA (2223bp) protein (741aa)
monomeric isocitrate dehydrogenase; K00031 isocitrate dehydrogenase [EC:1.1.1.42]
Monomeric isocitrate dehydrogenase n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W9R4_MAGSA
Isocitrate dehydrogenase {ECO:0000313|EMBL:AIW63080.1}; Flags: Fragment;; TaxID=1007128 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. pMbN1.;"
SCNpilot_cont_300_bf_scaffold_684_curated_11
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8270..8878)
DNA (609bp) protein (203aa)
Amidase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TPK1_9PROT
lysine decarboxylase family protein; K06966
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_684_curated_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8996..10012
DNA (1017bp) protein (339aa)
Peptidoglycan-binding LysM n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HS50_PARL1
peptidoglycan-binding LysM
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_684_curated_13
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10045..10737
DNA (693bp) protein (231aa)
phosphatidylserine decarboxylase (EC:4.1.1.65); K01613 phosphatidylserine decarboxylase [EC:4.1.1.65]
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=PSD_RHOS5
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_684_curated_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10780..11604
DNA (825bp) protein (275aa)
pssA; phosphatidylserine synthase (EC:2.7.8.8); K00998 phosphatidylserine synthase [EC:2.7.8.8]
Phosphatidylserine synthase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NWG5_AZOS1
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_684_curated_15
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11648..12265
DNA (618bp) protein (206aa)
CDP-alcohol phosphatidyltransferase n=1 Tax=Oceanibaculum indicum P24 RepID=K2KCN4_9PROT
CDP-alcohol phosphatidyltransferase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_684_curated_16
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12474..12635
DNA (162bp) protein (54aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_684_curated_17
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12663..13163
DNA (501bp) protein (167aa)
Flp pilus assembly protein, protease CpaA; K02278 prepilin peptidase CpaA [EC:3.4.23.43]
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI000370673F
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_684_curated_18
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13193..13801
DNA (609bp) protein (203aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_684_curated_19
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13807..14571)
DNA (765bp) protein (255aa)
2-deoxy-D-gluconate 3-dehydrogenase (EC:1.1.1.125); K00065 2-deoxy-D-gluconate 3-dehydrogenase [EC:1.1.1.125] id=14625654 bin=bin7_NC10_sister species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
2-deoxy-D-gluconate 3-dehydrogenase (EC:1.1.1.125); K00065 2-deoxy-D-gluconate 3-dehydrogenase [EC:1.1.1.125]
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_684_curated_20
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14871..15191)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZUV9_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_684_curated_21
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15234..15818)
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036CC0F0
RNA polymerase sigma-E factor (sigma-24) protein 2; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_684_curated_22
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15935..16399)
DNA (465bp) protein (155aa)
RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDB1_PHEZH
ECF subfamily RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_684_curated_23
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16523..16720
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SJX4_METPP
hypothetical protein
CsbD-like protein {ECO:0000313|EMBL:EWS60061.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
SCNpilot_cont_300_bf_scaffold_684_curated_24
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16942..17742
DNA (801bp) protein (267aa)
chemotaxis protein CheY n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCE68
two-component response regulator
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_684_curated_25
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17758..19488
DNA (1731bp) protein (577aa)
signal transduction histidine kinase (EC:2.7.3.-)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003728515
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_684_curated_26
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19481..22066
DNA (2586bp) protein (862aa)
Response regulator receiver domain protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A4H3_9PROT
sensory box sensor histidine kinase/response regulator
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_684_curated_27
unknown

Not on your lists

22147..22305
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_684_curated_28
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22366..22686
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SJX4_METPP
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_684_curated_29
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22738..23301
DNA (564bp) protein (188aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_684_curated_30
bacterium YEK0313, Bacteria

Not on your lists

23395..24966
DNA (1572bp) protein (524aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036881D3
Glutathione-binding protein GsiB {ECO:0000313|EMBL:CEJ10619.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
putative ABC transporter substrate-binding protein
Displaying items 1-30 of 56 in total

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