ggKbase home page

SCNpilot_cont_300_bf_scaffold_1789_curated

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1789_curated_1
unknown

Not on your lists

2..196
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1789_curated_2
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

244..627
DNA (384bp) protein (128aa)
deoxyribonuclease (EC:3.1.25.1)
Deoxyribonuclease n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y8W1_PARAH
Uncharacterized protein {ECO:0000313|EMBL:KFL26227.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_cont_300_bf_scaffold_1789_curated_3
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(699..1004)
DNA (306bp) protein (102aa)
DNA-binding protein, H-NS family protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SJ27_9RHOB
DNA-binding protein, H-NS family protein {ECO:0000313|EMBL:EAP77358.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhibens ISM.;"
histone-like nucleoid-structuring protein H-NS; K03746 DNA-binding protein H-NS
SCNpilot_cont_300_bf_scaffold_1789_curated_4
unknown

Not on your lists

1325..1783
DNA (459bp) protein (153aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1789_curated_5
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2037..2603
DNA (567bp) protein (189aa)
Putative cytochrome P460 n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ETP8_METSB
putative cytochrome P460
Putative cytochrome P460 {ECO:0000313|EMBL:ACK52400.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_1789_curated_6
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2610..4604)
DNA (1995bp) protein (665aa)
histidine kinase n=1 Tax=Pseudomonas stutzeri RepID=UPI0002E7F76A
Histidine kinase {ECO:0000313|EMBL:KJV36778.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
histidine kinase-response regulator hybrid protein
SCNpilot_cont_300_bf_scaffold_1789_curated_7
RIFOXYD1_FULL_Bdellovibrionales_55_31_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(4601..6358)
DNA (1758bp) protein (586aa)
Signal transduction histidine kinase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2WE55_9BRAD
histidine kinase
Tax=RIFOXYD1_FULL_Bdellovibrionales_55_31_curated
SCNpilot_cont_300_bf_scaffold_1789_curated_8
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6358..7359)
DNA (1002bp) protein (334aa)
Stage II sporulation protein E id=4374371 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Anti-sigma regulatory factor (Ser/Thr protein kinase) {ECO:0000313|EMBL:EJN10961.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
putative anti-sigma regulatory factor
SCNpilot_cont_300_bf_scaffold_1789_curated_9
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7365..7769)
DNA (405bp) protein (135aa)
anti-sigma regulatory factor n=1 Tax=Micromonospora sp. CNB394 RepID=UPI0003718EA4
Anti-sigma B factor RsbT {ECO:0000313|EMBL:EWM66506.1}; TaxID=457406 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
ATP-binding region ATPase domain-containing protein
SCNpilot_cont_300_bf_scaffold_1789_curated_10
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7753..8142)
DNA (390bp) protein (130aa)
Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I068_9BRAD
Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) {ECO:0000313|EMBL:EJN10963.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
anti-sigma-factor antagonist
SCNpilot_cont_300_bf_scaffold_1789_curated_11
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8153..9040)
DNA (888bp) protein (296aa)
Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3CR69_9BRAD
anti-sigma-factor antagonist
Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) {ECO:0000313|EMBL:EJN10964.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
SCNpilot_cont_300_bf_scaffold_1789_curated_12
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9278..9808
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00036B1758
Small-conductance mechanosensitive channel {ECO:0000313|EMBL:CCQ73275.1}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
mscS; mechanosensitive ion channel protein MscS
SCNpilot_cont_300_bf_scaffold_1789_curated_13
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9884..12289
DNA (2406bp) protein (802aa)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
putative phosphoketolase (EC:4.1.2.9); K01621 phosphoketolase [EC:4.1.2.9]
Probable phosphoketolase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WV18_9BRAD
SCNpilot_cont_300_bf_scaffold_1789_curated_14
unknown

Not on your lists

comp(12297..12479)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1789_curated_15
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12586..13527)
DNA (942bp) protein (314aa)
Protein FdhE homolog n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ES19_METSB
formate dehydrogenase accessory protein FdhE; K02380 FdhE protein
Protein FdhE homolog {ECO:0000256|HAMAP-Rule:MF_00611}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_1789_curated_16
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13524..14102)
DNA (579bp) protein (193aa)
formate dehydrogenase-N subunit gamma n=1 Tax=Methyloferula stellata RepID=UPI00036AE237
fdoI; formate dehydrogenase, cytochrome b556(fdo) subunit; K00127 formate dehydrogenase, gamma subunit
Formate dehydrogenase, cytochrome b556(Fdo) subunit {ECO:0000313|EMBL:CCB66141.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Displaying 16 items

View Taxonomy