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SCNpilot_cont_300_bf_scaffold_1238_curated

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1238_curated_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16..2604)
DNA (2589bp) protein (863aa)
Glycosyl transferase, family 2 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPD6_NITHX
glycosyl transferase family protein
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABE61911.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1238_curated_2
bacterium YEK0313, Bacteria

Not on your lists

comp(2662..3372)
DNA (711bp) protein (237aa)
Methyltransferase type 11 n=1 Tax=Halothece sp. (strain PCC 7418) RepID=K9YA32_HALP7
Methyltransferase domain protein {ECO:0000313|EMBL:CEJ10274.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
type 11 methyltransferase
SCNpilot_cont_300_bf_scaffold_1238_curated_3
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3852..4973
DNA (1122bp) protein (374aa)
Luciferase n=1 Tax=Rhodococcus opacus M213 RepID=K8X5K8_RHOOP
luciferase
Luciferase {ECO:0000313|EMBL:EKT76728.1}; TaxID=1129896 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus M213.;"
SCNpilot_cont_300_bf_scaffold_1238_curated_4
Ralstonia sp. 5_2_56FAA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4997..6148)
DNA (1152bp) protein (384aa)
Transporter, major facilitator family protein n=2 Tax=Ralstonia RepID=E2T1X3_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EGY62401.1}; TaxID=658080 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. 5_2_56FAA.;"
nepI; major facilitator superfamily protein
SCNpilot_cont_300_bf_scaffold_1238_curated_5
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6328..7380
DNA (1053bp) protein (351aa)
Transcriptional regulator, AraC family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZYR3_STAND
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ADH91032.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_300_bf_scaffold_1238_curated_6
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

comp(7387..8502)
DNA (1116bp) protein (372aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A441
NAD-dependent epimerase/dehydratase
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
SCNpilot_cont_300_bf_scaffold_1238_curated_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8499..9641)
DNA (1143bp) protein (381aa)
Rieske (2Fe-2S) domain protein n=2 Tax=Rhizobiales RepID=A7HU09_PARL1
Rieske (2Fe-2S) domain-containing protein
Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:ABS63392.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_1238_curated_8
Rhodococcus sp. EsD8, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9691..10476)
DNA (786bp) protein (262aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:CCW13704.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CCW13704.1};; TaxID=1301088 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. EsD8.;"
3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=Rhodococcus sp. EsD8 RepID=N1MA08_9NOCA
oxidoreductase
SCNpilot_cont_300_bf_scaffold_1238_curated_9
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(10496..12250)
DNA (1755bp) protein (585aa)
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:EHN10629.1}; EC=6.2.1.3 {ECO:0000313|EMBL:EHN10629.1};; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
acyl-CoA ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
hypothetical protein n=1 Tax=Sporichthya polymorpha RepID=UPI00035E24F7
SCNpilot_cont_300_bf_scaffold_1238_curated_10
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12635..13120
DNA (486bp) protein (162aa)
Transcriptional regulator, TetR family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU04_PARL1
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABS63387.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_1238_curated_11
Leisingera sp. ANG1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13220..14512)
DNA (1293bp) protein (431aa)
hypothetical protein n=1 Tax=Phaeobacter gallaeciensis RepID=UPI0002FA34DB
Uncharacterized protein {ECO:0000313|EMBL:KID07524.1}; TaxID=1002340 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1238_curated_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14573..15598)
DNA (1026bp) protein (342aa)
gME-2; GDP-mannose 3,5-epimerase 2 (EC:5.1.3.18)
NAD-dependent epimerase/dehydratase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CTS4_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1238_curated_13
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15895..16797)
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000316B31F
Transcriptional regulator {ECO:0000313|EMBL:EJN02245.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
transcriptional regulator, LysR family
SCNpilot_cont_300_bf_scaffold_1238_curated_14
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17009..17779
DNA (771bp) protein (257aa)
branched-chain amino acid ABC transporter ATP-binding protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00037027AF
braF; ABC transporter related protein
ABC transporter related protein {ECO:0000313|EMBL:AFK55571.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_300_bf_scaffold_1238_curated_15
bacterium YEK0313, Bacteria

Not on your lists

17769..19718
DNA (1950bp) protein (650aa)
Long-chain-fatty-acid--CoA ligase n=1 Tax=uncultured organism RepID=M1Q0M4_9ZZZZ
Long-chain-fatty-acid--CoA ligase FadD15 {ECO:0000313|EMBL:CEJ11070.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
AMP-dependent synthetase and ligase
SCNpilot_cont_300_bf_scaffold_1238_curated_16
bacterium YEK0313, Bacteria

Not on your lists

19726..20616
DNA (891bp) protein (297aa)
Inner-membrane translocator n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TS31_TISMK
High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:CEJ11069.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
braD; inner-membrane translocator
SCNpilot_cont_300_bf_scaffold_1238_curated_17
bacterium YEK0313, Bacteria

Not on your lists

20616..21689
DNA (1074bp) protein (358aa)
branched-chain amino acid ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000300801C
Leucine/isoleucine/valine transporter permease subunit {ECO:0000313|EMBL:CEJ11068.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
braE; inner-membrane translocator
SCNpilot_cont_300_bf_scaffold_1238_curated_18
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21729..22970
DNA (1242bp) protein (414aa)
Putative branched-chain amino acid transport system substrate-binding protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TS29_TISMK
putative branched-chain amino acid transport system substrate-binding protein
Putative branched-chain amino acid transport system substrate-binding protein {ECO:0000313|EMBL:AFK55567.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_300_bf_scaffold_1238_curated_19
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22987..23772
DNA (786bp) protein (262aa)
ABC transporter related protein n=1 Tax=uncultured organism RepID=M1Q0J5_9ZZZZ
Branched-chain amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:KHJ53812.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
livF; ABC transporter related protein
SCNpilot_cont_300_bf_scaffold_1238_curated_20
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23794..24606)
DNA (813bp) protein (271aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:EHH13111.1}; EC=4.2.1.17 {ECO:0000313|EMBL:EHH13111.1};; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
enoyl-CoA hydratase (EC:4.2.1.17) rbh
Enoyl-CoA hydratase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y560_9RHIZ
SCNpilot_cont_300_bf_scaffold_1238_curated_21
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24713..25303)
DNA (591bp) protein (197aa)
Uncharacterized protein {ECO:0000313|EMBL:KGM32781.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_cont_300_bf_scaffold_1238_curated_22
unknown

Not on your lists

comp(25300..25728)
DNA (429bp) protein (143aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1238_curated_23
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25725..28463)
DNA (2739bp) protein (913aa)
hypothetical protein n=1 Tax=Desulfobacter curvatus RepID=UPI00036A03B1
Uncharacterized protein {ECO:0000313|EMBL:EIT69337.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
type VI secretion system VgrG family protein
SCNpilot_cont_300_bf_scaffold_1238_curated_24
Gluconobacter oxydans, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28888..30246)
DNA (1359bp) protein (453aa)
Lipopolysaccharide N-acetylglucosaminyltransferase I n=1 Tax=Gluconobacter oxydans (strain 621H) RepID=Q5FQJ9_GLUOX
lipopolysaccharide N-acetylglucosaminyltransferase I
Lipopolysaccharide N-acetylglucosaminyltransferase I {ECO:0000313|EMBL:AAW61347.1}; TaxID=290633 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter oxydans (strain 621H) (Gluconobacter suboxydans).;"
SCNpilot_cont_300_bf_scaffold_1238_curated_25
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30252..31499)
DNA (1248bp) protein (416aa)
Glycosyl transferase n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YD12_THIV6
glycosyl transferase family protein
Glycosyl transferase family 2 {ECO:0000313|EMBL:KJB93802.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
SCNpilot_cont_300_bf_scaffold_1238_curated_26
Streptomyces scabiei, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31614..32375
DNA (762bp) protein (254aa)
hypothetical protein ; K00476 aspartate beta-hydroxylase [EC:1.14.11.16]
Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia diclina VS20 RepID=T0SAL5_9STRA
Uncharacterized protein {ECO:0000313|EMBL:KFF98744.1}; TaxID=1930 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces scabiei.;"
SCNpilot_cont_300_bf_scaffold_1238_curated_27
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32923..35985
DNA (3063bp) protein (1021aa)
Zinc-dependent metalloprotease n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I8I4_AZOC5
zinc-dependent metalloprotease
Zinc-dependent metalloprotease {ECO:0000313|EMBL:BAF88664.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_1238_curated_28
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36117..37490)
DNA (1374bp) protein (458aa)
Acyl-transferase transferase protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J5V6_POLGS
acyltransferase
Acyl-transferase transferase protein {ECO:0000313|EMBL:ADZ71210.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_1238_curated_29
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37490..39172)
DNA (1683bp) protein (561aa)
Fatty acid synthase transmembrane protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NU18_9RHOB
Fatty acid synthase transmembrane protein {ECO:0000313|EMBL:EAV43927.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
Fatty acid synthase transmembrane protein
Displaying 29 items

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