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SCNpilot_cont_300_bf_scaffold_2983_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2983_curated_1
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1175)
DNA (1173bp) protein (391aa)
Major facilitator superfamily MFS_1 n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21QT6_RHOFD
major facilitator transporter
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2983_curated_2
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1389..2921
DNA (1533bp) protein (511aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D319_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL12030.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_300_bf_scaffold_2983_curated_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2972..3808)
DNA (837bp) protein (279aa)
Dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07MS6_RHOP5
dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2983_curated_4
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3967..6945
DNA (2979bp) protein (993aa)
Putative protease n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I456_AZOC5
protease
Putative protease {ECO:0000313|EMBL:BAF87690.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_2983_curated_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7159..7593)
DNA (435bp) protein (145aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VGX4_RHOPX
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADU45371.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_300_bf_scaffold_2983_curated_6
unknown

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comp(7678..7872)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2983_curated_7
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8139..9200
DNA (1062bp) protein (354aa)
histidine kinase n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI00030A0C89
Signal transduction histidine kinase {ECO:0000313|EMBL:GAN50976.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
two-component sensor histidine kinase
SCNpilot_cont_300_bf_scaffold_2983_curated_8
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9197..9790
DNA (594bp) protein (198aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Ralstonia pickettii OR214 RepID=R0E358_RALPI
LuxR family transcriptional regulator {ECO:0000313|EMBL:ETR78732.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
two component LuxR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2983_curated_9
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9830..10492)
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036EFBA0
Bradyrhizobium elkanii strain UASWS1015 Contig170, whole genome shotgun sequence {ECO:0000313|EMBL:KIU50336.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
LuxR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2983_curated_10
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10720..12165
DNA (1446bp) protein (482aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D4K5_BRAJP
Membrane protein {ECO:0000313|EMBL:KJC50026.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2983_curated_11
unknown

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comp(12409..12756)
DNA (348bp) protein (116aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2983_curated_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13008..14165
DNA (1158bp) protein (386aa)
Transcriptional regulator, LuxR family protein n=1 Tax=Burkholderia sp. TJI49 RepID=F0G2N7_9BURK
Putative Regulatory protein LuxR {ECO:0000313|EMBL:CDX12042.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
LuxR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2983_curated_13
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14224..16428)
DNA (2205bp) protein (735aa)
UvrABC system protein B n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVG9_PARL1
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2983_curated_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16735..17466
DNA (732bp) protein (244aa)
Uncharacterized protein n=2 Tax=Agrobacterium RepID=Q7D0R0_AGRT5
hypothetical protein; K07090
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2983_curated_15
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17475..18176
DNA (702bp) protein (234aa)
DnaJ-like protein DjlA n=1 Tax=Oceanibaculum indicum P24 RepID=K2JNG1_9PROT
heat shock protein DnaJ domain-containing protein; K05801 DnaJ like chaperone protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2983_curated_16
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18207..18419
DNA (213bp) protein (71aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28); K01447 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IRH2_RHOCS
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying 16 items

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