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SCNpilot_cont_300_bf_scaffold_4094_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_4094_curated_1
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..3982
DNA (3981bp) protein (1327aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QRF7_BREDI
Uncharacterized protein {ECO:0000313|EMBL:KIC56625.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
prophage tail fiber protein
SCNpilot_cont_300_bf_scaffold_4094_curated_2
unknown

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3990..4268
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4094_curated_3
unknown

Not on your lists

4249..4593
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4094_curated_4
unknown

Not on your lists

4653..5021
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4094_curated_5
unknown

Not on your lists

5018..5308
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4094_curated_6
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5778..6359
DNA (582bp) protein (194aa)
Chitinase class I n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QRG3_BREDI
Chitinase class I {ECO:0000313|EMBL:EKY30618.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
glycoside hydrolase; K03791 putative chitinase
SCNpilot_cont_300_bf_scaffold_4094_curated_7
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6356..6730
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QRI5_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY30619.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
SCNpilot_cont_300_bf_scaffold_4094_curated_8
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6690..6920
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QVT8_BREDI
Putative uncharacterized protein {ECO:0000313|EMBL:EGF96717.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_4094_curated_9
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7185..7487)
DNA (303bp) protein (101aa)
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
SCNpilot_cont_300_bf_scaffold_4094_curated_10
unknown

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comp(7564..7803)
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4094_curated_11
RIFOXYB1_FULL_Caulobacterales_67_16_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7966..8238)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QRJ0_BREDI
hypothetical protein
Tax=RIFOXYB1_FULL_Caulobacterales_67_16_curated
SCNpilot_cont_300_bf_scaffold_4094_curated_12
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8434..8571)
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QSD7_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY30625.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_4094_curated_13
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8592..9092)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QSD7_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY30625.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_4094_curated_14
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9107..10369)
DNA (1263bp) protein (421aa)
DNA-directed DNA polymerase {ECO:0000313|EMBL:EHP94701.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EHP94701.1};; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
DNA-directed DNA polymerase n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KCM8_METEX
umuC; component of DNA polymerase V, subunit C; K03502 DNA polymerase V
SCNpilot_cont_300_bf_scaffold_4094_curated_15
Synechococcus sp. RCC307, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(10366..10581)
DNA (216bp) protein (72aa)
umuD; SOS-regulated protein; K03503 DNA polymerase V [EC:3.4.21.-]
Bacterial UmuD protein homolog (SOS-regulated protein) n=1 Tax=Synechococcus sp. (strain RCC307) RepID=A5GPY6_SYNR3
Bacterial UmuD protein homolog (SOS-regulated protein) {ECO:0000313|EMBL:CAK26945.1}; TaxID=316278 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. (strain RCC307).;"
SCNpilot_cont_300_bf_scaffold_4094_curated_16
unknown

Not on your lists

comp(10791..10994)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4094_curated_17
unknown

Not on your lists

comp(10991..11161)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4094_curated_18
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11308..12192
DNA (885bp) protein (295aa)
D12 class N6 adenine-specific DNA methyltransferase; K06223 DNA adenine methylase [EC:2.1.1.72]
D12 class N6 adenine-specific DNA methyltransferase n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QGA4_BRESC
D12 class N6 adenine-specific DNA methyltransferase {ECO:0000313|EMBL:ADL00720.1}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
SCNpilot_cont_300_bf_scaffold_4094_curated_19
unknown

Not on your lists

comp(12362..12556)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4094_curated_20
unknown

Not on your lists

12857..13096
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4094_curated_21
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13601..13828)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QYE2_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF95830.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_4094_curated_22
unknown

Not on your lists

13868..14581
DNA (714bp) protein (238aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4094_curated_23
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14785..15948
DNA (1164bp) protein (388aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=7
radical SAM protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QYE0_BREDI
SCNpilot_cont_300_bf_scaffold_4094_curated_24
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16081..16449
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QYD9_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF95827.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein; K08989 putative membrane protein
SCNpilot_cont_300_bf_scaffold_4094_curated_25
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16460..17284
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QYD8_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF95826.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
endopeptidase DegP
SCNpilot_cont_300_bf_scaffold_4094_curated_26
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17445..17813)
DNA (369bp) protein (123aa)
peptidase M16 domain-containing protein; K07263 zinc protease [EC:3.4.24.-]
Peptidase M16 inactive domain protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QYD7_BREDI
Peptidase M16 inactive domain protein {ECO:0000313|EMBL:EGF95825.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_4094_curated_27
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17813..20224)
DNA (2412bp) protein (804aa)
peptidase M16 domain-containing protein; K07263 zinc protease [EC:3.4.24.-]
Peptidase M16 inactive domain protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QEC8_BREDI
Peptidase M16 inactive domain protein {ECO:0000313|EMBL:EKY26050.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
SCNpilot_cont_300_bf_scaffold_4094_curated_28
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20332..20883)
DNA (552bp) protein (184aa)
peptidase T2 asparaginase 2; K13051 beta-aspartyl-peptidase (threonine type) [EC:3.4.19.5]
Putative L-asparaginase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QJ45_BREDI
Putative L-asparaginase {ECO:0000313|EMBL:EKY27988.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
SCNpilot_cont_300_bf_scaffold_4094_curated_29
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21283..21567
DNA (285bp) protein (95aa)
GroES-like protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QIZ4_BREDI
GroES-like protein {ECO:0000313|EMBL:EKY27989.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
alcohol dehydrogenase zinc-binding domain-containing protein
Displaying 29 items

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