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SCNpilot_cont_300_bf_scaffold_3938_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3938_curated_1
Brevundimonas sp. EAKA, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..890)
DNA (888bp) protein (296aa)
cyclopropane-fatty-acyl-phospholipid synthase; K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
Cyclopropane-fatty-acyl-phospholipid synthase family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W7B3_9CAUL
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:KDP94330.1}; TaxID=1495854 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. EAKA.;"
SCNpilot_cont_300_bf_scaffold_3938_curated_2
Brevundimonas sp. KM4, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1105..2568)
DNA (1464bp) protein (488aa)
deoxyribodipyrimidine photo-lyase (EC:4.1.99.3); K01669 deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
Deoxyribodipyrimidine photolyase family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W700_9CAUL
Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:KJV41738.1}; TaxID=1628191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. KM4.;"
SCNpilot_cont_300_bf_scaffold_3938_curated_3
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2558..3361)
DNA (804bp) protein (268aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QV65_BREDI
Putative uncharacterized protein {ECO:0000313|EMBL:EGF96494.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein; K09701 hypothetical protein
SCNpilot_cont_300_bf_scaffold_3938_curated_4
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3358..4692)
DNA (1335bp) protein (445aa)
Flavin containing amine oxidoreductase family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QV66_BREDI
Flavin containing amine oxidoreductase family protein {ECO:0000313|EMBL:EGF96495.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
amine oxidase
SCNpilot_cont_300_bf_scaffold_3938_curated_5
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4857..5429
DNA (573bp) protein (191aa)
RNA polymerase sigma factor, sigma-70 family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QV67_BREDI
RNA polymerase sigma factor, sigma-70 family protein {ECO:0000313|EMBL:EGF96496.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_3938_curated_6
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5426..6067
DNA (642bp) protein (214aa)
Transcriptional activator chrR n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QV68_BREDI
Transcriptional activator chrR {ECO:0000313|EMBL:EGF96497.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
anti-ECF sigma factor ChrR; K07167 putative transcriptional regulator
SCNpilot_cont_300_bf_scaffold_3938_curated_7
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6796..7203)
DNA (408bp) protein (136aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QV70_BREDI
Putative uncharacterized protein {ECO:0000313|EMBL:EGF96499.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3938_curated_8
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7411..8973)
DNA (1563bp) protein (521aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
GMP synthase, large subunit; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0I4_BREDI
SCNpilot_cont_300_bf_scaffold_3938_curated_9
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8970..9665)
DNA (696bp) protein (232aa)
pfs; 5-methylthioadenosine/S-adenosylhomocysteine deaminase (EC:3.2.2.9); K01243 S-adenosylhomocysteine/5'-methylthioadenosine nucleosidase [EC:3.2.2.9]
Putative 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QLQ7_BREDI
Putative 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000313|EMBL:EKY28507.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
SCNpilot_cont_300_bf_scaffold_3938_curated_10
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9662..10930)
DNA (1269bp) protein (423aa)
fmu (sun) domain protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
NOL1/NOP2/sun family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0I3_BREDI
NOL1/NOP2/sun family protein {ECO:0000313|EMBL:EGF94112.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_3938_curated_11
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10932..11330)
DNA (399bp) protein (133aa)
Inner membrane protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0I2_BREDI
Inner membrane protein {ECO:0000313|EMBL:EGF94111.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
eicosanoid and glutathione metabolism membrane-associated protein
SCNpilot_cont_300_bf_scaffold_3938_curated_12
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11396..12856)
DNA (1461bp) protein (487aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205]
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R031_BREDI
SCNpilot_cont_300_bf_scaffold_3938_curated_13
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13337..13528
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QKP9_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY28511.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3938_curated_14
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13770..14492)
DNA (723bp) protein (241aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
ribosomal RNA methyltransferase RrmJ/FtsJ; K02427 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R029_BREDI
SCNpilot_cont_300_bf_scaffold_3938_curated_15
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14573..15025
DNA (453bp) protein (151aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
cyclophilin type peptidyl-prolyl cis-trans isomerase; K01802 peptidylprolyl isomerase [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R028_BREDI
Displaying 15 items

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