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SCNpilot_cont_300_bf_scaffold_3456_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3456_curated_1
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..269
DNA (267bp) protein (89aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
phospho-N-acetylmuramoyl-pentapeptide-transferase; K01000 phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QWG5_BREDI
SCNpilot_cont_300_bf_scaffold_3456_curated_2
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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274..1794
DNA (1521bp) protein (507aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
UDP-N-acetylmuramoylalanine/D-glutamate ligase; K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1Q6I0_BREDI
SCNpilot_cont_300_bf_scaffold_3456_curated_3
unknown

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comp(1979..2545)
DNA (567bp) protein (189aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3456_curated_4
unknown

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comp(2603..2770)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3456_curated_5
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2941..3951
DNA (1011bp) protein (337aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminut
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227); K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QWG3_BREDI
SCNpilot_cont_300_bf_scaffold_3456_curated_6
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4122..5252
DNA (1131bp) protein (377aa)
Mechanosensitive ion channel family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QWG2_BREDI
Mechanosensitive ion channel family protein {ECO:0000313|EMBL:EGF95366.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
mechanosensitive ion channel MscS
SCNpilot_cont_300_bf_scaffold_3456_curated_7
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5254..6384)
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1Q9P2_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY24646.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3456_curated_8
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6381..7757)
DNA (1377bp) protein (459aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QA95_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY24645.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3456_curated_9
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7838..8947)
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1Q9J8_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY24644.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_3456_curated_10
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9493..11040)
DNA (1548bp) protein (516aa)
Serine carboxypeptidase family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QWG1_BREDI
Serine carboxypeptidase family protein {ECO:0000313|EMBL:EGF95365.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
peptidase S10, serine carboxypeptidase
SCNpilot_cont_300_bf_scaffold_3456_curated_11
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11228..12292)
DNA (1065bp) protein (355aa)
Holdfast attachment protein C n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QWG0_BREDI
Holdfast attachment protein C {ECO:0000313|EMBL:EGF95364.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
ABC transporter
SCNpilot_cont_300_bf_scaffold_3456_curated_12
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12491..13123
DNA (633bp) protein (211aa)
Glucose-binding protein n=1 Tax=Pseudomonas putida RepID=Q9Z422_PSEPU
Glucose-binding protein {ECO:0000313|EMBL:AAD00241.1}; TaxID=303 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (Arthrobacter siderocapsulatus).;"
SCNpilot_cont_300_bf_scaffold_3456_curated_13
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13151..13741
DNA (591bp) protein (197aa)
Bacterial regulatory protein, tetR family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QWF9_BREDI
Bacterial regulatory protein, tetR family protein {ECO:0000313|EMBL:EGF95363.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3456_curated_14
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14168..14596
DNA (429bp) protein (143aa)
UPF0260 protein BDIM_21980 n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QWF7_BREDI
UPF0260 protein BDIM_21980 {ECO:0000256|HAMAP-Rule:MF_00676}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein; K09160 hypothetical protein
SCNpilot_cont_300_bf_scaffold_3456_curated_15
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14627..15322
DNA (696bp) protein (232aa)
PAS fold family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QWF6_BREDI
PAS fold family protein {ECO:0000313|EMBL:EGF95360.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
multi-sensor hybrid histidine kinase
Displaying 15 items

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