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SCNpilot_cont_300_bf_scaffold_4512_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_4512_curated_1
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..795)
DNA (795bp) protein (265aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Sphingomonas sp. S17 RepID=F3WW75_9SPHN
Putative HlyD family secretion protein {ECO:0000313|EMBL:GAM02613.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein
SCNpilot_cont_300_bf_scaffold_4512_curated_2
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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841..2148
DNA (1308bp) protein (436aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036F3BC2
Sphingomonas taxi strain 30a NODE_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30225.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
two component sigma54 specific Fis family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_4512_curated_3
unknown

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comp(2159..2923)
DNA (765bp) protein (255aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4512_curated_4
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3296..3601)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IZP5_9SPHN
Multidrug ABC transporter ATPase {ECO:0000313|EMBL:KHL26658.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
ABC transporter-like protein; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_cont_300_bf_scaffold_4512_curated_5
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3559..5058)
DNA (1500bp) protein (500aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IZP5_9SPHN
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAM01315.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_cont_300_bf_scaffold_4512_curated_6
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5333..7903)
DNA (2571bp) protein (857aa)
peptidase M14 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00035E2E09
Peptidase M14 {ECO:0000313|EMBL:AHY60421.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
peptidase M14 carboxypeptidase A
SCNpilot_cont_300_bf_scaffold_4512_curated_7
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7918..10563)
DNA (2646bp) protein (882aa)
TonB dependent receptor family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QYN5_BREDI
TonB dependent receptor family protein {ECO:0000313|EMBL:EGF93916.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_4512_curated_8
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10831..11571
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QYN6_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF93917.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_4512_curated_9
unknown

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11620..12123
DNA (504bp) protein (168aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4512_curated_10
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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12805..13272
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QYN8_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF93919.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_4512_curated_11
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13285..14001)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QYN9_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF93920.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_4512_curated_12
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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14191..14751
DNA (561bp) protein (187aa)
TetR family transcriptional regulator n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A03E
Scaffold38, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30019.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
TetR-family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_4512_curated_13
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14748..15467)
DNA (720bp) protein (240aa)
TetR family transcriptional regulator n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A68C53
Transcriptional regulator {ECO:0000313|EMBL:EJL30218.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
TetR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_4512_curated_14
unknown

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comp(15477..15809)
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4512_curated_15
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15932..16942)
DNA (1011bp) protein (337aa)
carboxylesterase type B; K03929 para-nitrobenzyl esterase [EC:3.1.1.-]
Carboxylic ester hydrolase; EC=3.1.1.-;; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
Carboxylesterase type B n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RAS4_PHEZH
SCNpilot_cont_300_bf_scaffold_4512_curated_16
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17219..17428
DNA (210bp) protein (70aa)
TonB dependent receptor family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZ62_BREDI
TonB-dependent receptor {ECO:0000313|EMBL:EKY27119.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
TonB-dependent receptor
Displaying 16 items

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