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SCNpilot_cont_300_bf_scaffold_172_curated

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Displaying items 1-30 of 1227 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_172_curated_1
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..91)
DNA (90bp) protein (30aa)
Inosose isomerase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R823_PELHB
inosose isomerase
Inosose isomerase {ECO:0000313|EMBL:AEQ51301.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_cont_300_bf_scaffold_172_curated_2
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(281..1273)
DNA (993bp) protein (331aa)
Periplasmic binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R848_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB06803.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_172_curated_3
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1457..2614)
DNA (1158bp) protein (386aa)
Putative oxidoreductase protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R822_PELHB
Oxidoreductase {ECO:0000313|EMBL:KFL31708.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative oxidoreductase protein
SCNpilot_cont_300_bf_scaffold_172_curated_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2619..3362)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XVU3_RHIRD
Xylose isomerase {ECO:0000313|EMBL:EPR18179.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_172_curated_5
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3376..4128)
DNA (753bp) protein (251aa)
Xylose isomerase n=2 Tax=Mesorhizobium RepID=V7H8S0_9RHIZ
Xylose isomerase {ECO:0000313|EMBL:KKB82756.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
xylose isomerase domain-containing protein
SCNpilot_cont_300_bf_scaffold_172_curated_6
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4258..5334)
DNA (1077bp) protein (359aa)
Transporter of small molecules n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R820_PELHB
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB11528.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
transporter of small molecules; K02023 multiple sugar transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_172_curated_7
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5341..6267)
DNA (927bp) protein (309aa)
Binding-protein-dependent transporter inner membrane component n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y4Z9_9RHIZ
Sugar ABC transporter permease {ECO:0000313|EMBL:KKB82754.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
binding-protein-dependent transporter inner membrane component; K02026 multiple sugar transport system permease protein
SCNpilot_cont_300_bf_scaffold_172_curated_8
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6267..7223)
DNA (957bp) protein (319aa)
Binding-protein-dependent transporter inner membrane component n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y500_9RHIZ
Sugar ABC transporter permease {ECO:0000313|EMBL:KKB82753.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
binding-protein-dependent transporter inner membrane component; K02025 multiple sugar transport system permease protein
SCNpilot_cont_300_bf_scaffold_172_curated_9
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7335..8573)
DNA (1239bp) protein (413aa)
Extracellular solute-binding protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y501_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB82752.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_172_curated_10
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8811..9839
DNA (1029bp) protein (343aa)
alanine racemase (EC:5.1.1.1); K05499 LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F030D7
Uncharacterized protein {ECO:0000313|EMBL:KFL26260.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_cont_300_bf_scaffold_172_curated_11
unknown

Not on your lists

9994..10239
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_172_curated_12
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10425..11927)
DNA (1503bp) protein (501aa)
AMP-binding enzyme domain protein n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IQG8_9CHRO
Uncharacterized protein {ECO:0000313|EMBL:CDX19512.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
transferase
SCNpilot_cont_300_bf_scaffold_172_curated_13
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11924..15037)
DNA (3114bp) protein (1038aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IXN2_METNO
Methylobacterium aquaticum plasmid pMaq22A_1p DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ49786.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_172_curated_14
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15295..17085
DNA (1791bp) protein (597aa)
ABC transporter, nucleotide binding/ATPase protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J1J9_POLGS
y4gM; ABC transporter permease/ATPase; K06147 ATP-binding cassette, subfamily B, bacterial
ABC transporter, nucleotide binding/ATPase protein {ECO:0000313|EMBL:ADZ70800.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_172_curated_15
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17228..18109
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003789D65
Uncharacterized protein {ECO:0000313|EMBL:ESZ23819.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_172_curated_16
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18145..18741)
DNA (597bp) protein (199aa)
Putative ArsR family transcriptional regulator n=1 Tax=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) RepID=B2GH77_KOCRD
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:KFC71002.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
transcription regulator ArsR
SCNpilot_cont_300_bf_scaffold_172_curated_17
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18887..19573
DNA (687bp) protein (229aa)
Putative membrane protein hemolysin III-like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCM0_PELHB
DNA-binding protein {ECO:0000313|EMBL:KKB11536.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative membrane protein hemolysin III-like protein; K11068 hemolysin III
SCNpilot_cont_300_bf_scaffold_172_curated_18
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19560..20030)
DNA (471bp) protein (157aa)
Exported protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6L2_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB80942.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein; K09005 hypothetical protein
SCNpilot_cont_300_bf_scaffold_172_curated_19
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20184..20591
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000374C4A3
Uncharacterized protein {ECO:0000313|EMBL:CEL17166.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_172_curated_20
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20686..21309)
DNA (624bp) protein (208aa)
Cold shock protein CspB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6L1_PELHB
Cold shock protein CspB {ECO:0000313|EMBL:CDP54278.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
cold shock protein CspB; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_cont_300_bf_scaffold_172_curated_21
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21414..22799)
DNA (1386bp) protein (462aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI0003711A19
Uncharacterized protein {ECO:0000313|EMBL:EJT02377.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_172_curated_22
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22796..23554)
DNA (759bp) protein (253aa)
ABC transporter related protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4EZN5_9RHIZ
ABC transporter related protein {ECO:0000313|EMBL:EHS54097.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
putative ABC-type metal transport system, ATPase component
SCNpilot_cont_300_bf_scaffold_172_curated_23
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23547..24605)
DNA (1059bp) protein (353aa)
Iron ion transport system, inner membrane component n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DKW4_9RHIZ
Iron-siderophore ABC transporter permease protein {ECO:0000313|EMBL:AJC83085.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
putative ABC-type Fe3+-siderophore transport system, permease component
SCNpilot_cont_300_bf_scaffold_172_curated_24
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24609..25673)
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036F1C65
Iron ion ABC transporter, periplasmic component {ECO:0000313|EMBL:EJT02380.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
putative ABC-type Fe3+-hydroxamate transport system, periplasmic component
SCNpilot_cont_300_bf_scaffold_172_curated_25
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25779..26588)
DNA (810bp) protein (270aa)
Zn-dependent alcohol dehydrogenase n=1 Tax=Paracoccus zeaxanthinifaciens RepID=UPI0003B47496
Glycosyltransferase {ECO:0000313|EMBL:KGJ04592.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
glycosyltransferase
SCNpilot_cont_300_bf_scaffold_172_curated_26
Lactobacillus curvatus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26689..27651
DNA (963bp) protein (321aa)
Putative Bifunctional glycosyl transferase, family 8 n=1 Tax=Lactobacillus sakei subsp. sakei (strain 23K) RepID=Q38ZB8_LACSS
Proteinral stress A domain protein {ECO:0000313|EMBL:KHO13086.1}; TaxID=28038 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus curvatus.;"
bifunctional glycolsyltransferase/transpeptidase penicillin binding protein
SCNpilot_cont_300_bf_scaffold_172_curated_27
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27725..28144
DNA (420bp) protein (140aa)
glyoxalase/bleomycin resistance protein/dioxygenase; K01759 lactoylglutathione lyase [EC:4.4.1.5]
glyoxalase n=1 Tax=Methylopila sp. M107 RepID=UPI000376203D
Glyoxalase {ECO:0000313|EMBL:KGM31005.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_cont_300_bf_scaffold_172_curated_28
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28290..28745
DNA (456bp) protein (152aa)
Peptidase M15A n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6K9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB09344.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
peptidase M15A
SCNpilot_cont_300_bf_scaffold_172_curated_29
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29144..29593
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HRV8_9SPHN
Putative K+ channel TrkA-N {ECO:0000313|EMBL:KEQ55056.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
Ion transport 2 domain-containing protein
SCNpilot_cont_300_bf_scaffold_172_curated_30
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29693..30661
DNA (969bp) protein (323aa)
Putative transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MK96_RHIL3
Uncharacterized protein {ECO:0000313|EMBL:KFL29114.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
transcriptional regulator
Displaying items 1-30 of 1227 in total

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