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SCNpilot_cont_300_bf_scaffold_3625_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3625_curated_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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206..2365
DNA (2160bp) protein (720aa)
polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polyribonucleotide nucleotidyltransferase {ECO:0000255|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000255|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000255|HAMAP-Rule:MF_01595}; Short=PNPase {ECO:0000255|HAMAP-Rule:MF_01595};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Polyribonucleotide nucleotidyltransferase n=2 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=PNP_NITHX
SCNpilot_cont_300_bf_scaffold_3625_curated_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2605..3420)
DNA (816bp) protein (272aa)
exodeoxyribonuclease III (xth); K01142 exodeoxyribonuclease III [EC:3.1.11.2]
Exodeoxyribonuclease III (Xth) n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QS04_NITHX
Exodeoxyribonuclease III (Xth) {ECO:0000313|EMBL:ABE60993.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_3625_curated_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3523..4452)
DNA (930bp) protein (310aa)
Outer membrane lipoprotein carrier protein LolA n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QS05_NITHX
outer membrane lipoprotein carrier protein LolA
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_3625_curated_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4792..7239)
DNA (2448bp) protein (816aa)
DNA translocase FtsK n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QS06_NITHX
cell division protein FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
DNA translocase FtsK {ECO:0000313|EMBL:ABE60991.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_3625_curated_5
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7258..8553)
DNA (1296bp) protein (432aa)
Aminotransferase {ECO:0000313|EMBL:ABE60990.1}; EC=2.6.1.- {ECO:0000313|EMBL:ABE60990.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Aminotransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QS07_NITHX
class I and II aminotransferase
SCNpilot_cont_300_bf_scaffold_3625_curated_6
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8720..9940)
DNA (1221bp) protein (407aa)
2-octaprenyl-6-methoxyphenyl hydroxylase; K03185 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
2-octaprenyl-6-methoxyphenyl hydroxylase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WS97_9BRAD
2-octaprenyl-6-methoxyphenyl hydroxylase {ECO:0000313|EMBL:EAQ37107.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_300_bf_scaffold_3625_curated_7
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10104..10964
DNA (861bp) protein (287aa)
acyl-CoA thioesterase (EC:3.1.2.2); K10805 acyl-CoA thioesterase II [EC:3.1.2.-]
Acyl-CoA thioesterase {ECO:0000313|EMBL:ABA03346.1}; EC=3.1.2.2 {ECO:0000313|EMBL:ABA03346.1};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Acyl-CoA thioesterase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SWJ5_NITWN
SCNpilot_cont_300_bf_scaffold_3625_curated_8
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11098..11436
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WS92_9BRAD
nitrogen regulatory protein P-II; K04752 nitrogen regulatory protein P-II 2
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:EAQ37112.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_300_bf_scaffold_3625_curated_9
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11701..12039
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II (GlnB, GlnK) n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QS11_NITHX
nitrogen regulatory protein P-II; K04752 nitrogen regulatory protein P-II 2
Nitrogen regulatory protein P-II (GlnB, GlnK) {ECO:0000313|EMBL:ABE60986.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_3625_curated_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12077..13420
DNA (1344bp) protein (448aa)
Ammonium transporter n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QS12_NITHX
ammonium transporter; K03320 ammonium transporter, Amt family
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_3625_curated_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13463..14296)
DNA (834bp) protein (278aa)
enoyl-ACP reductase (EC:1.3.1.10); K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9]
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QS56_NITHX
SCNpilot_cont_300_bf_scaffold_3625_curated_12
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14468..15691)
DNA (1224bp) protein (408aa)
3-oxoacyl-(Acyl carrier protein) synthase {ECO:0000313|EMBL:EAQ37160.1}; EC=2.3.1.41 {ECO:0000313|EMBL:EAQ37160.1};; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
3-oxoacyl-ACP synthase (EC:2.3.1.41); K00647 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
3-oxoacyl-(Acyl carrier protein) synthase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WS44_9BRAD
SCNpilot_cont_300_bf_scaffold_3625_curated_13
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15798..16322)
DNA (525bp) protein (175aa)
3-hydroxydecanoyl-ACP dehydratase (EC:4.2.1.60); K01716 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.60]
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase {ECO:0000255|HAMAP-Rule:MF_00405}; EC=4.2.1.59 {ECO:0000255|HAMAP-Rule:MF_00405};; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA {ECO:0000255|HAMAP-Rule:MF_00405}; Beta-hydroxydecanoyl thioester dehydrase {ECO:0000255|HAMAP-Rule:MF_00405}; Trans-2-decenoyl-[acyl-carrier-protein] isomerase {ECO:0000255|HAMAP-Rule:MF_00405}; EC=5.3.3.14 {ECO:0000255|HAMAP-Rule:MF_00405};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobial
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=FABA_NITWN rbh
SCNpilot_cont_300_bf_scaffold_3625_curated_14
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16828..17319
DNA (492bp) protein (164aa)
Ferric uptake regulator, Fur family n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SWN8_NITWN
ferric-uptake regulator; K09826 Fur family transcriptional regulator, iron response regulator
Ferric uptake regulator, Fur family {ECO:0000313|EMBL:ABA03303.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_3625_curated_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17497..18021)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QS52_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE60945.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_3625_curated_16
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18307..18597
DNA (291bp) protein (97aa)
glycolate reductase (EC:1.1.1.26); K00015 glyoxylate reductase [EC:1.1.1.26]
Glycolate reductase {ECO:0000313|EMBL:ABE60946.1}; EC=1.1.1.26 {ECO:0000313|EMBL:ABE60946.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Glycolate reductase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QS51_NITHX
Displaying 16 items

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