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SCNpilot_cont_300_bf_scaffold_2790_curated

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2790_curated_1
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..320
DNA (318bp) protein (106aa)
Band 7 protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXV5_9BRAD
Band 7 protein {ECO:0000313|EMBL:EAQ35180.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
Band 7 protein
SCNpilot_cont_300_bf_scaffold_2790_curated_2
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

338..784
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXV6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ35181.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein; K07340 hypothetical protein
SCNpilot_cont_300_bf_scaffold_2790_curated_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(800..1777)
DNA (978bp) protein (326aa)
KpsF/GutQ family protein (EC:5.3.1.13); K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13]
KpsF/GutQ family protein {ECO:0000313|EMBL:ABE64143.1}; EC=5.3.1.13 {ECO:0000313|EMBL:ABE64143.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
KpsF/GutQ family protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI04_NITHX
SCNpilot_cont_300_bf_scaffold_2790_curated_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1998..3701
DNA (1704bp) protein (568aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI05_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64142.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2790_curated_5
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3894..5471)
DNA (1578bp) protein (526aa)
FGGY-family pentulose kinase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI06_NITHX
FGGY-family pentulose kinase
FGGY-family pentulose kinase {ECO:0000313|EMBL:ABE64141.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2790_curated_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5529..6092)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI07_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64140.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2790_curated_7
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6298..6702)
DNA (405bp) protein (135aa)
Transcriptional regulatory protein, LysR n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXV7_9BRAD
Transcriptional regulatory protein, LysR {ECO:0000313|EMBL:EAQ35184.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
LysR family transcriptional regulator; K02019 molybdate transport system regulatory protein
SCNpilot_cont_300_bf_scaffold_2790_curated_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6876..9500)
DNA (2625bp) protein (875aa)
MscS Mechanosensitive ion channel n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI10_NITHX
MscS mechanosensitive ion channel
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:ABE64137.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2790_curated_9
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9978..10256
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXV3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ35186.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2790_curated_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10361..11584
DNA (1224bp) protein (408aa)
Acyl-CoA dehydrogenase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI11_NITHX
Acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ABE64136.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2790_curated_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11594..12136
DNA (543bp) protein (181aa)
Flavin reductase-like, FMN-binding protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI12_NITHX
flavin reductase-like, FMN-binding
Flavin reductase-like, FMN-binding protein {ECO:0000313|EMBL:ABE64135.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2790_curated_12
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12184..13404
DNA (1221bp) protein (407aa)
Sodium/proton antiporter, NhaD family n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SU40_NITWN
hypothetical protein
Sodium/proton antiporter, NhaD family {ECO:0000313|EMBL:ABA04201.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_2790_curated_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13419..14723)
DNA (1305bp) protein (435aa)
nicotinate phosphoribosyltransferase (EC:2.4.2.11); K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11]
Nicotinate phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00570}; Short=NAPRTase {ECO:0000255|HAMAP-Rule:MF_00570};; EC=6.3.4.21 {ECO:0000255|HAMAP-Rule:MF_00570};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Nicotinate phosphoribosyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=PNCB_NITHX rbh
SCNpilot_cont_300_bf_scaffold_2790_curated_14
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14891..15772)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WSV3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ36903.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
molybdate ABC transporter periplasmic molybdate-binding protein
SCNpilot_cont_300_bf_scaffold_2790_curated_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15769..17907)
DNA (2139bp) protein (713aa)
TonB-dependent siderophore receptor n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ68_NITHX
TonB-dependent siderophore receptor {ECO:0000313|EMBL:ABE61629.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
TonB-dependent siderophore receptor
SCNpilot_cont_300_bf_scaffold_2790_curated_16
unknown

Not on your lists

18164..18343
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2790_curated_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18365..18976
DNA (612bp) protein (204aa)
LemA n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI15_NITHX
hypothetical protein; K03744 LemA protein
LemA {ECO:0000313|EMBL:ABE64132.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2790_curated_18
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18998..19870
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI16_NITHX
hypothetical protein; K06872 uncharacterized protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64131.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2790_curated_19
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19872..20369
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI17_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64130.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2790_curated_20
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20433..21785)
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PWA5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42653.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
amidohydrolase
SCNpilot_cont_300_bf_scaffold_2790_curated_21
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21986..23173
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI18_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64129.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2790_curated_22
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23272..23439
DNA (168bp) protein (56aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002F804C8
Uncharacterized protein {ECO:0000313|EMBL:ERF81363.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_cont_300_bf_scaffold_2790_curated_23
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23727..26732)
DNA (3006bp) protein (1002aa)
L-proline dehydrogenase {ECO:0000313|EMBL:ABE64128.1}; EC=1.5.99.8 {ECO:0000313|EMBL:ABE64128.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12 1.5.99.8); K13821 proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.99.8 1.5.1.12]
L-proline dehydrogenase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI19_NITHX
SCNpilot_cont_300_bf_scaffold_2790_curated_24
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27072..27740
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI20_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64127.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2790_curated_25
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27916..28116)
DNA (201bp) protein (67aa)
Cold-shock DNA-binding protein family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI21_NITHX
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
Cold-shock DNA-binding protein family {ECO:0000313|EMBL:ABE64126.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2790_curated_26
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28365..28697)
DNA (333bp) protein (111aa)
Sulfite dehydrogenase (Cytochrome) subunit SorB {ECO:0000313|EMBL:ABE64125.1}; EC=1.8.2.1 {ECO:0000313|EMBL:ABE64125.1};; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Sulfite dehydrogenase (Cytochrome) subunit SorB n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI22_NITHX
cytochrome c oxidoreductase subunit B
SCNpilot_cont_300_bf_scaffold_2790_curated_27
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28709..29917)
DNA (1209bp) protein (403aa)
Sulfite dehydrogenase (Cytochrome) subunit SorA apoprotein {ECO:0000313|EMBL:ABE64124.1}; EC=1.8.2.1 {ECO:0000313|EMBL:ABE64124.1};; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Sulfite dehydrogenase (Cytochrome) subunit SorA apoprotein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI23_NITHX
twin-arginine translocation pathway signal
SCNpilot_cont_300_bf_scaffold_2790_curated_28
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30132..30380)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI24_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64123.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2790_curated_29
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30713..32368
DNA (1656bp) protein (552aa)
Glycosyl transferase, family 39 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI25_NITHX
glycosyl transferase family protein
Glycosyl transferase, family 39 {ECO:0000313|EMBL:ABE64122.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2790_curated_30
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32370..33422)
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI27_NITHX
hypothetical protein; K08990 putative membrane protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64120.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Displaying 30 items

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