ggKbase home page

SCNpilot_cont_300_bf_scaffold_1041_curated

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1041_curated_1
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..131)
DNA (129bp) protein (43aa)
Formate/nitrite transporter n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WW31_9BRAD
Formate/nitrite transporter {ECO:0000313|EMBL:EAQ35807.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
formate/nitrite transporter
SCNpilot_cont_300_bf_scaffold_1041_curated_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(369..3629)
DNA (3261bp) protein (1087aa)
Tetratricopeptide TPR_2 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPC7_NITHX
Tetratricopeptide TPR_2 {ECO:0000313|EMBL:ABE61920.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1041_curated_3
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4578..4865)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WW30_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ35810.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1041_curated_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5080..5751)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPC5_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61922.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1041_curated_5
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6048..7034
DNA (987bp) protein (329aa)
2-nitropropane dioxygenase; K00459 nitronate monooxygenase [EC:1.13.12.16]
2-nitropropane dioxygenase {ECO:0000313|EMBL:ABE61923.1}; EC=1.13.12.16 {ECO:0000313|EMBL:ABE61923.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
2-nitropropane dioxygenase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPC4_NITHX
SCNpilot_cont_300_bf_scaffold_1041_curated_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7078..8394)
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPC3_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61924.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1041_curated_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8527..8739)
DNA (213bp) protein (71aa)
Protein SlyX homolog n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=SLYX_NITHX
SlyX family protein; K03745 SlyX protein
Protein SlyX homolog {ECO:0000255|HAMAP-Rule:MF_00715}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1041_curated_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8732..9499)
DNA (768bp) protein (256aa)
UPF0176 protein Nham_1078 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Y1078_NITHX rbh
rhodanese-like protein; K07146 UPF0176 protein
UPF0176 protein Nham_1078 {ECO:0000255|HAMAP-Rule:MF_00469}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1041_curated_9
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9624..9839)
DNA (216bp) protein (72aa)
CsbD-like protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WW23_9BRAD
hypothetical protein
CsbD-like protein {ECO:0000313|EMBL:EAQ35817.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_300_bf_scaffold_1041_curated_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10143..12239)
DNA (2097bp) protein (699aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPB9_NITHX
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:ABE61928.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
methyl-accepting chemotaxis sensory transducer
SCNpilot_cont_300_bf_scaffold_1041_curated_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13082..15346
DNA (2265bp) protein (755aa)
fadE; acyl-CoA dehydrogenase (EC:1.3.99.3); K06445 acyl-CoA dehydrogenase [EC:1.3.99.-]
Acyl-CoA dehydrogenase-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPB4_NITHX
Acyl-CoA dehydrogenase-like protein {ECO:0000313|EMBL:ABE61933.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1041_curated_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15346..16629
DNA (1284bp) protein (428aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA C-acyltransferase {ECO:0000313|EMBL:ABE61934.1}; EC=2.3.1.16 {ECO:0000313|EMBL:ABE61934.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Acetyl-CoA C-acyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPB3_NITHX
SCNpilot_cont_300_bf_scaffold_1041_curated_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16845..18935
DNA (2091bp) protein (697aa)
3-hydroxyacyl-CoA dehydrogenase; K01782 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:ABE61935.1}; EC=1.1.1.35 {ECO:0000313|EMBL:ABE61935.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPB2_NITHX
SCNpilot_cont_300_bf_scaffold_1041_curated_14
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19135..19569
DNA (435bp) protein (145aa)
thioesterase superfamily protein; K10806 acyl-CoA thioesterase YciA [EC:3.1.2.-]
Thioesterase superfamily n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPB1_NITHX
Thioesterase superfamily {ECO:0000313|EMBL:ABE61936.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1041_curated_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19804..20034
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPB0_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61937.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1041_curated_16
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20146..21696
DNA (1551bp) protein (517aa)
glpD; glycerol-3-phosphate dehydrogenase (EC:1.1.5.3); K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Homodimeric glycerol 3-phosphate dehydrogenase (Quinone) n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPA9_NITHX
SCNpilot_cont_300_bf_scaffold_1041_curated_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21737..22240)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPA8_NITHX
hypothetical protein; K09983 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61939.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1041_curated_18
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22365..23987
DNA (1623bp) protein (541aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NGF4_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29577.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
twin-arginine translocation pathway signal
SCNpilot_cont_300_bf_scaffold_1041_curated_19
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23974..24540
DNA (567bp) protein (189aa)
Cytochrome c, class I n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPA5_NITHX
cytochrome c, class I
Cytochrome c, class I {ECO:0000313|EMBL:ABE61942.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1041_curated_20
Pseudoalteromonas spongiae, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24710..25282)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Pseudoalteromonas spongiae UST010723-006 RepID=U1KL47_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ERG51755.1}; TaxID=1117319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas spongiae UST010723-006.;"
histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
Displaying 20 items

View Taxonomy