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SCNpilot_cont_300_bf_scaffold_1523_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1523_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

228..515
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W869_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY79928.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1523_curated_2
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(549..1070)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00035D52D8
Uncharacterized protein {ECO:0000313|EMBL:KHJ54571.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1523_curated_3
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1273..1524
DNA (252bp) protein (84aa)
Transposase n=2 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SU07_NITWN
transposase; K07492 putative transposase
Transposase {ECO:0000313|EMBL:ABA04234.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_1523_curated_4
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1642..2028
DNA (387bp) protein (129aa)
Transposase, IS4 family n=2 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3STW4_NITWN
transposase, IS4
Transposase, IS4 family {ECO:0000313|EMBL:ABA04277.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_1523_curated_5
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2495..2695
DNA (201bp) protein (67aa)
antitoxin n=1 Tax=Rhizobium leguminosarum RepID=UPI00036CA2D7
vapB; Antitoxin VapB32 (modular protein)
Antitoxin VapB32 (Modular protein) {ECO:0000313|EMBL:CDI12376.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
SCNpilot_cont_300_bf_scaffold_1523_curated_6
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2692..3075
DNA (384bp) protein (128aa)
PilT protein domain-containing protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0WHJ4_9RHIZ
PilT protein domain-containing protein {ECO:0000313|EMBL:EJZ22719.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
hypothetical protein; K07062
SCNpilot_cont_300_bf_scaffold_1523_curated_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3295..3615)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00036E6369
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADU42459.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_300_bf_scaffold_1523_curated_8
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4507..5178)
DNA (672bp) protein (224aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
DNA-methyltransferase n=1 Tax=Sphingobium baderi LL03 RepID=T0HUC0_9SPHN
DNA methylase N-4/N-6 domain-containing protein
SCNpilot_cont_300_bf_scaffold_1523_curated_9
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5522..5752)
DNA (231bp) protein (77aa)
Uncharacterized protein n=2 Tax=Rhizobium meliloti RepID=K0P5Z9_RHIML
Uncharacterized protein {ECO:0000313|EMBL:GAJ29127.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1523_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6210..6533
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EY56_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78514.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1523_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6523..6903
DNA (381bp) protein (127aa)
XRE family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1S9_9RHIZ
XRE family transcriptional regulator {ECO:0000313|EMBL:EYR78513.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator helix turn helix domain
SCNpilot_cont_300_bf_scaffold_1523_curated_12
Paracoccus sp. 10990, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6917..8614
DNA (1698bp) protein (566aa)
Resolvase domain n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZJJ4_GLUDA
Resolvase {ECO:0000313|EMBL:KGJ19646.1}; TaxID=1525716 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 10990.;"
Resolvase domain
SCNpilot_cont_300_bf_scaffold_1523_curated_13
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8844..9761
DNA (918bp) protein (306aa)
Adenine-specific methyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCY6_PELHB
adenine-specific methyltransferase
Adenine-specific methyltransferase {ECO:0000313|EMBL:AEQ52769.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_cont_300_bf_scaffold_1523_curated_14
unknown

Not on your lists

comp(9830..9937)
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1523_curated_15
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9934..10905)
DNA (972bp) protein (324aa)
Conjugal transfer protein trbB n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FXX1_PHAMO
Conjugal transfer protein trbB {ECO:0000313|EMBL:CCG43209.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
SCNpilot_cont_300_bf_scaffold_1523_curated_16
bacterium YEK0313, Bacteria

Not on your lists

comp(11110..11529)
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037D7E22
HTH-type transcriptional regulator GltC {ECO:0000313|EMBL:CEJ16015.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1523_curated_17
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11944..14355)
DNA (2412bp) protein (804aa)
TonB-dependent siderophore receptor n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WQY6_9BRAD
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EAQ37607.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_300_bf_scaffold_1523_curated_18
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14640..15596)
DNA (957bp) protein (319aa)
FecR protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SSZ1_NITWN
FecR protein
FecR protein {ECO:0000313|EMBL:ABA04600.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_1523_curated_19
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15658..16188)
DNA (531bp) protein (177aa)
Fec I like protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SSZ0_NITWN
fec I like protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Fec I like protein {ECO:0000313|EMBL:ABA04601.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_1523_curated_20
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16930..17268)
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SQZ5_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA05296.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_1523_curated_21
bacterium YEK0313, Bacteria

Not on your lists

comp(17558..20053)
DNA (2496bp) protein (832aa)
TonB-dependent siderophore receptor n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M941_METRJ
Ferrichrome-iron receptor {ECO:0000313|EMBL:CEJ10287.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_300_bf_scaffold_1523_curated_22
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20247..21254)
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036DC4BF
Uncharacterized protein {ECO:0000313|EMBL:KDP76492.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
fecR; putative iron transport regulator transmembrane protein
SCNpilot_cont_300_bf_scaffold_1523_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21472..21978)
DNA (507bp) protein (169aa)
RNA polymerase sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWB3_9RHIZ
RNA polymerase sigma factor {ECO:0000313|EMBL:EYR78140.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_1523_curated_24
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22539..22772)
DNA (234bp) protein (78aa)
conjugal transfer protein TrbB n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00037895FA
Conjugative transfer protein TrbB {ECO:0000313|EMBL:EGP10320.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
SCNpilot_cont_300_bf_scaffold_1523_curated_25
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22763..23308)
DNA (546bp) protein (182aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Sphingomonas sp. LH128 RepID=J8W5P2_9SPHN
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:EJU15026.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
SCNpilot_cont_300_bf_scaffold_1523_curated_26
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23813..24751)
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037D7E22
LysR family transcriptional regulator {ECO:0000313|EMBL:ETR77817.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
transcriptional regulator
Displaying 26 items

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