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SCNpilot_cont_300_bf_scaffold_682_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_682_curated_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1916)
DNA (1914bp) protein (638aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036C79A1
Cation efflux system protein CzcA {ECO:0000313|EMBL:CEG10553.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
multidrug ABC transporter
SCNpilot_cont_300_bf_scaffold_682_curated_2
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1913..3025)
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4P5_9BRAD
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:CEG10552.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_682_curated_3
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3044..4264)
DNA (1221bp) protein (407aa)
Major facilitator superfamily MFS_1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4P6_9BRAD
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EFI52926.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
major facilitator superfamily transporter
SCNpilot_cont_300_bf_scaffold_682_curated_4
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4257..4775)
DNA (519bp) protein (173aa)
ChrB domain-containing protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4P7_9BRAD
ChrB domain-containing protein {ECO:0000313|EMBL:EFI52927.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
ChrB domain-containing protein
SCNpilot_cont_300_bf_scaffold_682_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5189..6625)
DNA (1437bp) protein (479aa)
phenylhydantoinase; K01464 dihydropyrimidinase [EC:3.5.2.2]
dihydropyrimidinase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030E575B
Dihydropyrimidinase {ECO:0000313|EMBL:KFC73080.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_cont_300_bf_scaffold_682_curated_6
bacterium YEK0313, Bacteria

Not on your lists

comp(6677..7420)
DNA (744bp) protein (248aa)
Asp/Glu racemase; K01799 maleate isomerase [EC:5.2.1.1]
Asp/Glu/hydantoin racemase n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X162_9BURK
Maleate isomerase {ECO:0000313|EMBL:CEJ11643.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_300_bf_scaffold_682_curated_7
bacterium YEK0313, Bacteria

Not on your lists

comp(7583..8887)
DNA (1305bp) protein (435aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002E3EEEE
Putative sulfoacetate transporter SauU {ECO:0000313|EMBL:CEJ11644.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
gudP; glucarate transporter GudP
SCNpilot_cont_300_bf_scaffold_682_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9091..9840)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036CC256
Transcriptional regulatory protein {ECO:0000313|EMBL:KFC73082.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_682_curated_9
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10029..10784
DNA (756bp) protein (252aa)
hydantoin racemase (EC:5.1.-.-)
Putative hydantoin racemase {ECO:0000313|EMBL:CAQ70479.1}; EC=5.1.-.- {ECO:0000313|EMBL:CAQ70479.1};; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
Asp/Glu/hydantoin racemase n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI000362B39A
SCNpilot_cont_300_bf_scaffold_682_curated_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11429..11683)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8N6T6_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS26262.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
type IV pilus assembly PilZ
SCNpilot_cont_300_bf_scaffold_682_curated_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11790..12128)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NBK8_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS26261.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_682_curated_12
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12289..13089)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IIR9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF82429.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_682_curated_13
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13281..14654)
DNA (1374bp) protein (458aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JWW1_DESFR
two-component sensor histidine kinase; putative heavy-metal sensor (Cu/Zn)
SCNpilot_cont_300_bf_scaffold_682_curated_14
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14641..15369)
DNA (729bp) protein (243aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Caulobacter crescentus OR37 RepID=R0EEQ0_CAUCE
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:ENZ83913.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
response regulator receiver
SCNpilot_cont_300_bf_scaffold_682_curated_15
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15431..18085)
DNA (2655bp) protein (885aa)
Putative lipoprotein-releasing system transmembrane protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LRP9_RHITR
putative lipoprotein-releasing system transmembrane protein
Putative lipoprotein-releasing system transmembrane protein {ECO:0000313|EMBL:AGB73907.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_682_curated_16
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(18082..18750)
DNA (669bp) protein (223aa)
ABC transporter related protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TWF9_9CHLR
ABC transporter related protein {ECO:0000313|EMBL:EFH84542.1}; Flags: Precursor;; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
ABC-type antimicrobial peptide transport system, ATPase component
SCNpilot_cont_300_bf_scaffold_682_curated_17
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18743..19396)
DNA (654bp) protein (218aa)
Putative lipoprotein-releasing system ATP-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LUU5_RHITR
ABC transporter, permease protein {ECO:0000313|EMBL:KEC69706.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
putative lipoprotein-releasing system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_682_curated_18
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19398..19988)
DNA (591bp) protein (197aa)
Putative lipoprotein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98E07_RHILO
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:BAB51113.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_300_bf_scaffold_682_curated_19
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20376..20753
DNA (378bp) protein (126aa)
Phosphoesterase PA-phosphatase related n=2 Tax=Methylobacterium RepID=B1ZCH1_METPB
PA-phosphatase-like protein
Phosphoesterase PA-phosphatase related {ECO:0000313|EMBL:ACB82220.1}; Flags: Precursor;; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
SCNpilot_cont_300_bf_scaffold_682_curated_20
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21024..21293
DNA (270bp) protein (90aa)
Fe2+ transport system protein A n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I335_9BRAD
Fe2+ transport system protein A {ECO:0000313|EMBL:EJN13736.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
feoA; FeoA family protein; K04758 ferrous iron transport protein A
SCNpilot_cont_300_bf_scaffold_682_curated_21
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21726..22055
DNA (330bp) protein (110aa)
Ferrous iron transport protein B n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TZV8_9BRAD
Iron transporter FeoB {ECO:0000313|EMBL:KIZ47426.1}; Flags: Fragment;; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
feoB; ferrous iron transport protein B; K04759 ferrous iron transport protein B
SCNpilot_cont_300_bf_scaffold_682_curated_22
unknown

Not on your lists

comp(23342..23515)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_682_curated_23
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23581..24303)
DNA (723bp) protein (241aa)
Glycolate oxidase FAD binding subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1I9H3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC57640.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_682_curated_24
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24433..25401
DNA (969bp) protein (323aa)
Rubrerythrin n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4M1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG06644.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein rbh
SCNpilot_cont_300_bf_scaffold_682_curated_25
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25404..25934
DNA (531bp) protein (177aa)
Cytochrome B561 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4M0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG06645.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
cytochrome B561; K12262 cytochrome b561
SCNpilot_cont_300_bf_scaffold_682_curated_26
Mesorhizobium sp. L103C565B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26232..27017
DNA (786bp) protein (262aa)
UPI0003CDF164 related cluster n=1 Tax=unknown RepID=UPI0003CDF164
Endonuclease DDE {ECO:0000313|EMBL:ESZ49319.1}; TaxID=1287094 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C565B0.;"
insertion sequence transposase protein
SCNpilot_cont_300_bf_scaffold_682_curated_27
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27049..30288)
DNA (3240bp) protein (1080aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4L9_9BRAD
Nickel and cobalt resistance protein CnrA {ECO:0000313|EMBL:CEG06646.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
heavy metal efflux pump CzcA; K15726 cobalt-zinc-cadmium resistance protein CzcA
SCNpilot_cont_300_bf_scaffold_682_curated_28
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30292..31053)
DNA (762bp) protein (254aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4L8_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig156, whole genome shotgun sequence {ECO:0000313|EMBL:KIU52666.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
secretion protein HlyD; K15727 cobalt-zinc-cadmium resistance protein CzcB
Displaying 28 items

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