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SCNpilot_cont_300_bf_scaffold_967_curated

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_967_curated_1
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..142)
DNA (141bp) protein (47aa)
Formate/nitrite transporter n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WW31_9BRAD
Formate/nitrite transporter {ECO:0000313|EMBL:EAQ35807.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
formate/nitrite transporter
SCNpilot_cont_300_bf_scaffold_967_curated_2
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(461..997)
DNA (537bp) protein (179aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
ppa; inorganic pyrophosphatase; K01507 inorganic pyrophosphatase [EC:3.6.1.1]
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000361AA9B
SCNpilot_cont_300_bf_scaffold_967_curated_3
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1039..1584)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CAU5_METED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAX24228.1}; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain DSM 5838 / DM4) (Methylobacterium; dichloromethanicum (strain DM4)).;"
SCNpilot_cont_300_bf_scaffold_967_curated_4
unknown

Not on your lists

comp(1752..1847)
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_967_curated_5
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1844..3475)
DNA (1632bp) protein (544aa)
Putative DNA mismatch repair protein n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CAU6_METED
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP68120.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
DNA mismatch repair protein
SCNpilot_cont_300_bf_scaffold_967_curated_6
unknown

Not on your lists

comp(3478..3618)
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_967_curated_7
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4083..6218)
DNA (2136bp) protein (712aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
Enolase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EFB7_9SPHN
enolase
SCNpilot_cont_300_bf_scaffold_967_curated_8
unknown

Not on your lists

comp(6481..7212)
DNA (732bp) protein (244aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_967_curated_9
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7179..7505)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI0003656D66
Uncharacterized protein {ECO:0000313|EMBL:KDM67693.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
hypothetical protein; K09137 hypothetical protein
SCNpilot_cont_300_bf_scaffold_967_curated_10
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7516..7890)
DNA (375bp) protein (125aa)
Putative fluoride ion transporter CrcB n=3 Tax=Acidiphilium RepID=A5FV99_ACICJ
CrcB protein
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
SCNpilot_cont_300_bf_scaffold_967_curated_11
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7974..9950)
DNA (1977bp) protein (659aa)
Putative NADH dehydrogenase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J4H7_ACIMA
putative NADH dehydrogenase
Putative NADH dehydrogenase {ECO:0000313|EMBL:BAJ80029.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
SCNpilot_cont_300_bf_scaffold_967_curated_12
Burkholderia sp. TJI49, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9943..10731)
DNA (789bp) protein (263aa)
NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Burkholderia sp. TJI49 RepID=F0FWR1_9BURK
NADH ubiquinone oxidoreductase, 20 kDa subunit {ECO:0000313|EMBL:EGD06341.1}; TaxID=987057 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. TJI49.;"
putative NADH ubiquinone oxidoreductase
SCNpilot_cont_300_bf_scaffold_967_curated_13
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10740..12203)
DNA (1464bp) protein (488aa)
Putative NADH-ubiquinone oxidoreductase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J4H5_ACIMA
putative NADH-ubiquinone oxidoreductase
Putative NADH-ubiquinone oxidoreductase {ECO:0000313|EMBL:BAJ80027.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
SCNpilot_cont_300_bf_scaffold_967_curated_14
Burkholderia sp. TJI49, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12200..13684)
DNA (1485bp) protein (495aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5); K05903 NADH dehydrogenase (quinone) [EC:1.6.99.5]
NADH dehydrogenase (Quinone) n=1 Tax=Burkholderia sp. TJI49 RepID=F0FWR3_9BURK
NADH dehydrogenase (Quinone) {ECO:0000313|EMBL:EGD06343.1}; TaxID=987057 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. TJI49.;"
SCNpilot_cont_300_bf_scaffold_967_curated_15
Burkholderia sp. TJI49, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13686..14366)
DNA (681bp) protein (227aa)
hypothetical protein; K12140 hydrogenase-4 component E [EC:1.-.-.-]
Hydrogenase 4 membrane component (E) n=1 Tax=Burkholderia sp. TJI49 RepID=F0FWR4_9BURK
Hydrogenase 4 membrane component (E) {ECO:0000313|EMBL:EGD06344.1}; TaxID=987057 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. TJI49.;"
SCNpilot_cont_300_bf_scaffold_967_curated_16
Burkholderia sp. TJI49, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14371..15318)
DNA (948bp) protein (316aa)
Formate hydrogenlyase subunit 4-like protein n=1 Tax=Burkholderia sp. TJI49 RepID=F0FWR5_9BURK
Formate hydrogenlyase subunit 4-like protein {ECO:0000313|EMBL:EGD06345.1}; TaxID=987057 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. TJI49.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_967_curated_17
Roseobacter sp. AzwK-3b, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15536..15955)
DNA (420bp) protein (140aa)
HIT family protein n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FN65_9RHOB
HIT family protein {ECO:0000313|EMBL:EDM72551.1}; TaxID=351016 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. AzwK-3b.;"
HIT family protein
SCNpilot_cont_300_bf_scaffold_967_curated_18
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16333..20136)
DNA (3804bp) protein (1268aa)
ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase class II {ECO:0000313|EMBL:ABA04832.1}; EC=1.17.4.- {ECO:0000313|EMBL:ABA04832.1};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Ribonucleoside-diphosphate reductase class II n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SSA9_NITWN
SCNpilot_cont_300_bf_scaffold_967_curated_19
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21050..21409)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLL8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62879.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_967_curated_20
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21790..24852)
DNA (3063bp) protein (1021aa)
UvrABC system protein A n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLL9_NITHX
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
uvrA; excinuclease ABC subunit A; K03701 excinuclease ABC subunit A
SCNpilot_cont_300_bf_scaffold_967_curated_21
unknown

Not on your lists

24981..25139
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_967_curated_22
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25529..26299)
DNA (771bp) protein (257aa)
Putative outer-membrane protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WWS4_9BRAD
Putative outer-membrane protein {ECO:0000313|EMBL:EAQ35566.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
outer-membrane protein precursor
SCNpilot_cont_300_bf_scaffold_967_curated_23
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26651..27142
DNA (492bp) protein (164aa)
Single-stranded DNA-binding protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLM1_NITHX
single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_967_curated_24
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27278..27730
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A4N0_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH89893.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_300_bf_scaffold_967_curated_25
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28299..29564)
DNA (1266bp) protein (422aa)
RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
23S rRNA m(5)U-1939 methyltransferase {ECO:0000313|EMBL:ABE61655.1}; EC=2.1.1.- {ECO:0000313|EMBL:ABE61655.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ42_NITHX
SCNpilot_cont_300_bf_scaffold_967_curated_26
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29794..30699)
DNA (906bp) protein (302aa)
Transcriptional regulator, LysR family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QS59_NITHX
LysR family transcriptional regulator; K04761 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABE60938.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_967_curated_27
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30977..33166
DNA (2190bp) protein (730aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
heme catalase/peroxidase (EC:1.11.1.6); K03782 catalase-peroxidase [EC:1.11.1.21]
Catalase-peroxidase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WS41_9BRAD
SCNpilot_cont_300_bf_scaffold_967_curated_28
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33747..34013)
DNA (267bp) protein (89aa)
BolA family protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YDA0_SORCE
BolA family protein
BolA family protein {ECO:0000313|EMBL:AGP40793.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
SCNpilot_cont_300_bf_scaffold_967_curated_29
unknown

Not on your lists

34137..34448
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_967_curated_30
unknown

Not on your lists

comp(34522..34812)
DNA (291bp) protein (97aa)

This feature has no annotations

Displaying items 1-30 of 53 in total

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