ggKbase home page

SCNpilot_cont_300_bf_scaffold_692_curated

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_692_curated_1
unknown

Not on your lists

1..267
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_692_curated_2
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(172..1428)
DNA (1257bp) protein (419aa)
Peroxidase n=1 Tax=Rhodobacter sp. AKP1 RepID=L1KBQ7_9RHOB
CypX protein {ECO:0000313|EMBL:BAQ46288.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_692_curated_3
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1874..4141)
DNA (2268bp) protein (756aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXZ5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ35140.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_692_curated_4
unknown

Not on your lists

4862..4960
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_692_curated_5
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5165..5440)
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037A8FEF
Uncharacterized protein {ECO:0000313|EMBL:EJN14831.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_692_curated_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5466..5699)
DNA (234bp) protein (78aa)
ATP synthase epsilon chain 2 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=ATPE2_NITHX
atpC; F0F1 ATP synthase subunit epsilon
ATP synthase epsilon chain 2 {ECO:0000255|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit 2 {ECO:0000255|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit 2 {ECO:0000255|HAMAP-Rule:MF_00530}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_692_curated_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5812..7413)
DNA (1602bp) protein (534aa)
YidE/YbjL duplication n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPU3_NITHX
YidE/YbjL duplication; K07085 putative transport protein
YidE/YbjL duplication {ECO:0000313|EMBL:ABE61754.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_692_curated_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7439..8266)
DNA (828bp) protein (276aa)
pyruvate formate-lyase activating protein; K04069 pyruvate formate lyase activating enzyme [EC:1.97.1.4]
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Pyruvate formate-lyase activating n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPU4_NITHX
SCNpilot_cont_300_bf_scaffold_692_curated_9
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8280..10550)
DNA (2271bp) protein (757aa)
Formate acetyltransferase {ECO:0000313|EMBL:ABE61752.1}; EC=2.3.1.54 {ECO:0000313|EMBL:ABE61752.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
formate acetyltransferase (EC:2.3.1.54); K00656 formate C-acetyltransferase [EC:2.3.1.54]
Formate acetyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPU5_NITHX
SCNpilot_cont_300_bf_scaffold_692_curated_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10841..11770)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPU7_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61750.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_692_curated_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11767..13392)
DNA (1626bp) protein (542aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPU8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61749.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_692_curated_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13530..15422)
DNA (1893bp) protein (631aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Histidine kinase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPU9_NITHX
histidine kinase
SCNpilot_cont_300_bf_scaffold_692_curated_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15592..16011)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPV2_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61745.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_692_curated_14
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16508..16963
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPV4_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61743.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_692_curated_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17007..17807
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPV5_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61742.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_692_curated_16
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17845..18279)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X2C4_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAQ33618.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_300_bf_scaffold_692_curated_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18568..20298)
DNA (1731bp) protein (577aa)
Sulphate transporter n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPV7_NITHX
sulfate transporter
Sulphate transporter {ECO:0000313|EMBL:ABE61740.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_692_curated_18
unknown

Not on your lists

comp(20295..20390)
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_692_curated_19
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20575..20952)
DNA (378bp) protein (126aa)
Response regulator receiver domain protein (CheY-like) n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPV9_NITHX
response regulator receiver domain-containing protein
Response regulator receiver domain protein (CheY-like) {ECO:0000313|EMBL:ABE61738.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_692_curated_20
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21078..21710)
DNA (633bp) protein (211aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPW0_NITHX
two component LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ABE61737.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_692_curated_21
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22050..22733
DNA (684bp) protein (228aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPW2_NITHX
fixK; transcriptional regulator FixK; K15861 CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ABE61735.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_692_curated_22
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23275..23931)
DNA (657bp) protein (219aa)
enoyl-ACP reductase (EC:1.3.1.10); K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9]
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPW5_NITHX
SCNpilot_cont_300_bf_scaffold_692_curated_23
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24060..25274)
DNA (1215bp) protein (405aa)
acetate kinase (EC:2.7.2.1); K00925 acetate kinase [EC:2.7.2.1]
Acetate kinase {ECO:0000255|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000255|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000255|HAMAP-Rule:MF_00020}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Acetate kinase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=ACKA_NITHX rbh
SCNpilot_cont_300_bf_scaffold_692_curated_24
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25280..26251)
DNA (972bp) protein (324aa)
phosphate acetyltransferase (EC:2.3.1.8); K00625 phosphate acetyltransferase [EC:2.3.1.8]
Phosphate butyryltransferase {ECO:0000313|EMBL:ABE61730.1}; EC=2.3.1.19 {ECO:0000313|EMBL:ABE61730.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Phosphate butyryltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPW7_NITHX
SCNpilot_cont_300_bf_scaffold_692_curated_25
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26281..28506)
DNA (2226bp) protein (742aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPW8_NITHX
Uncharacterized protein {ECO:0000313|EMBL:ABE61729.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_692_curated_26
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28584..29666)
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPW9_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61728.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_692_curated_27
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29812..30333
DNA (522bp) protein (174aa)
GCN5-related N-acetyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPX0_NITHX
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABE61727.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_692_curated_28
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30978..31568)
DNA (591bp) protein (197aa)
Integrase catalytic subunit n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UW97_9SPHN
Integrase catalytic subunit {ECO:0000313|EMBL:ENY82685.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Fis family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_692_curated_29
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31565..32458)
DNA (894bp) protein (298aa)
UPI0003CEB3FC related cluster n=1 Tax=unknown RepID=UPI0003CEB3FC
Transposase ISRM3 {ECO:0000313|EMBL:ESY64126.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
transposase, mutator type
SCNpilot_cont_300_bf_scaffold_692_curated_30
Rhodobacteraceae bacterium KLH11, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33013..33360)
DNA (348bp) protein (116aa)
ISCc3, transposase OrfA n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NWX4_9RHOB
ISCc3, transposase OrfA {ECO:0000313|EMBL:EEE35457.1}; TaxID=467661 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium KLH11.;"
transposase IS3/IS911
Displaying items 1-30 of 41 in total

View Taxonomy