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SCNpilot_cont_300_bf_scaffold_802_curated

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_802_curated_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..313
DNA (312bp) protein (104aa)
branched-chain alpha-keto acid dehydrogenase subunit E2 (EC:2.3.1.61); K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Dihydrolipoamide acetyltransferase, long form n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMI1_NITHX
SCNpilot_cont_300_bf_scaffold_802_curated_2
Alishewanella aestuarii, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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345..998
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Gayadomonas joobiniege RepID=UPI00035F78E9
Uncharacterized protein {ECO:0000313|EMBL:EJI84032.1}; TaxID=1197174 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewanella aestuarii B11.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_802_curated_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1004..2425
DNA (1422bp) protein (474aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Dihydrolipoyl dehydrogenase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMI0_NITHX
SCNpilot_cont_300_bf_scaffold_802_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2532..2948)
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000361BB29
Uncharacterized protein {ECO:0000313|EMBL:EKS39416.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_802_curated_5
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3216..4301)
DNA (1086bp) protein (362aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QN04_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP07507.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_802_curated_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4546..5880)
DNA (1335bp) protein (445aa)
Type I secretion membrane fusion protein, HlyD n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IXW2_RHOP2
Type I secretion membrane fusion protein, HlyD; K12542 membrane fusion protein LapC
Type I secretion membrane fusion protein, HlyD {ECO:0000313|EMBL:ABD06948.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_300_bf_scaffold_802_curated_7
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5867..8107)
DNA (2241bp) protein (747aa)
ABC transporter n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QN02_9BRAD
ABC transporter {ECO:0000313|EMBL:EGP07505.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
ABC transporter, toxin secretion; K12541 ATP-binding cassette, subfamily C, bacterial LapB
SCNpilot_cont_300_bf_scaffold_802_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8342..9910)
DNA (1569bp) protein (523aa)
TolC family type I secretion outer membrane protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PIQ7_9BRAD
TolC family type I secretion outer membrane protein {ECO:0000313|EMBL:EKS39420.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
secretion outer membrane protein, TolC family; K12543 outer membrane protein LapE
SCNpilot_cont_300_bf_scaffold_802_curated_9
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10221..11396
DNA (1176bp) protein (392aa)
Saccharopine dehydrogenase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKI9_NITHX
saccharopine dehydrogenase
Saccharopine dehydrogenase {ECO:0000313|EMBL:ABE63258.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_802_curated_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11380..12657)
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKJ0_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63257.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_802_curated_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12691..14223)
DNA (1533bp) protein (511aa)
Sugar transferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKJ1_NITHX
sugar transferase
Sugar transferase {ECO:0000313|EMBL:ABE63256.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_802_curated_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14336..15469)
DNA (1134bp) protein (378aa)
Glycosyl transferase, group 1 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKJ2_NITHX
group 1 glycosyl transferase
Glycosyl transferase, group 1 {ECO:0000313|EMBL:ABE63255.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_802_curated_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15473..16174)
DNA (702bp) protein (234aa)
Polysaccharide export protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKJ3_NITHX
polysaccharide export protein
Polysaccharide export protein {ECO:0000313|EMBL:ABE63254.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_802_curated_14
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16412..18562
DNA (2151bp) protein (717aa)
Lipopolysaccharide biosynthesis n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKJ4_NITHX
lipopolysaccharide biosynthesis protein
Lipopolysaccharide biosynthesis {ECO:0000313|EMBL:ABE63253.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_802_curated_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18590..19786)
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKJ5_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63252.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_802_curated_16
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19929..20135)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKJ6_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63251.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_802_curated_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20233..21315
DNA (1083bp) protein (361aa)
Heme A synthase {ECO:0000255|HAMAP-Rule:MF_01665}; Short=HAS {ECO:0000255|HAMAP-Rule:MF_01665};; EC=1.3.-.- {ECO:0000255|HAMAP-Rule:MF_01665};; Cytochrome aa3-controlling protein {ECO:0000255|HAMAP-Rule:MF_01665}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Heme A synthase n=2 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=CTAA_NITHX
cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15
SCNpilot_cont_300_bf_scaffold_802_curated_18
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21638..22891
DNA (1254bp) protein (418aa)
Major facilitator superfamily protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYZ1_9BRAD
Major facilitator superfamily protein {ECO:0000313|EMBL:EAQ34794.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
major facilitator transporter; K02575 MFS transporter, NNP family, nitrate/nitrite transporter
SCNpilot_cont_300_bf_scaffold_802_curated_19
unknown

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comp(22953..23525)
DNA (573bp) protein (191aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_802_curated_20
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23592..24161)
DNA (570bp) protein (190aa)
O-acetylhomoserine aminocarboxypropyltransferase (EC:2.5.1.49); K01740 O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
O-acetylhomoserine sulfhydrolase {ECO:0000313|EMBL:ABE63248.1}; EC=2.5.1.49 {ECO:0000313|EMBL:ABE63248.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
O-acetylhomoserine sulfhydrolase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKJ9_NITHX
Displaying 20 items

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