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SCNpilot_cont_300_bf_scaffold_2026_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2026_curated_1
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1595
DNA (1593bp) protein (531aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
pyrG; CTP synthetase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2]
CTP synthase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WZH9_9BRAD
SCNpilot_cont_300_bf_scaffold_2026_curated_2
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1945..2526
DNA (582bp) protein (194aa)
2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55); K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000255|HAMAP-Rule:MF_00056}; EC=2.5.1.55 {ECO:0000255|HAMAP-Rule:MF_00056};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00056}; Short=KDO 8-P synthase {ECO:0000255|HAMAP-Rule:MF_00056};; Short=KDOPS {ECO:0000255|HAMAP-Rule:MF_00056};; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000255|HAMAP-Rule:MF_00056}; TaxID=323098 species="Bacteria; Proteobacteria; Alpha
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=KDSA_NITWN rbh
SCNpilot_cont_300_bf_scaffold_2026_curated_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2523..3734
DNA (1212bp) protein (404aa)
Major facilitator superfamily MFS_1 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMJ2_NITHX
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABE62555.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2026_curated_4
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3746..4219)
DNA (474bp) protein (158aa)
7-cyano-7-deazaguanine reductase; K09457 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000255|HAMAP-Rule:MF_00818}; EC=1.7.1.13 {ECO:0000255|HAMAP-Rule:MF_00818};; 7-cyano-7-carbaguanine reductase {ECO:0000255|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000255|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000255|HAMAP-Rule:MF_00818}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=QUEF_NITWN rbh
SCNpilot_cont_300_bf_scaffold_2026_curated_5
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4452..5735
DNA (1284bp) protein (428aa)
eno; phosphopyruvate hydratase (EC:4.2.1.11); K01689 enolase [EC:4.2.1.11]
Enolase {ECO:0000255|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000255|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000255|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000255|HAMAP-Rule:MF_00318}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Enolase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=ENO_NITHX rbh
SCNpilot_cont_300_bf_scaffold_2026_curated_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5820..6497)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMI8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62559.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2026_curated_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6735..7985
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMI7_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62560.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2026_curated_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8000..8587
DNA (588bp) protein (196aa)
Isoprenylcysteine carboxyl methyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMI6_NITHX
isoprenylcysteine carboxyl methyltransferase
Isoprenylcysteine carboxyl methyltransferase {ECO:0000313|EMBL:ABE62561.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2026_curated_9
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8723..9280
DNA (558bp) protein (186aa)
NADPH-dependent FMN reductase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMI5_NITHX
NADPH-dependent FMN reductase
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ABE62562.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2026_curated_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9341..9658
DNA (318bp) protein (106aa)
Septum formation initiator n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMI4_NITHX
septum formation initiator
Septum formation initiator {ECO:0000313|EMBL:ABE62563.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2026_curated_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9859..10881
DNA (1023bp) protein (341aa)
pyruvate dehydrogenase (lipoamide) (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Pyruvate dehydrogenase (Lipoamide) n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMI3_NITHX
SCNpilot_cont_300_bf_scaffold_2026_curated_12
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10910..12280
DNA (1371bp) protein (457aa)
pyruvate dehydrogenase subunit beta (EC:1.2.4.1); K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
Transketolase {ECO:0000313|EMBL:ABA05078.1}; EC=1.2.4.1 {ECO:0000313|EMBL:ABA05078.1};; EC=2.3.1.61 {ECO:0000313|EMBL:ABA05078.1};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Transketolase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SRL3_NITWN
SCNpilot_cont_300_bf_scaffold_2026_curated_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12295..13362
DNA (1068bp) protein (356aa)
branched-chain alpha-keto acid dehydrogenase subunit E2 (EC:2.3.1.61); K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Dihydrolipoamide acetyltransferase, long form n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMI1_NITHX
Displaying 13 items

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