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SCNpilot_cont_300_bf_scaffold_91_curated

Search features with annotation key words

Displaying items 1-30 of 167 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_91_curated_1
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..994
DNA (993bp) protein (331aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
glucuronate isomerase (EC:5.3.1.12); K01812 glucuronate isomerase [EC:5.3.1.12]
Uronate isomerase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WEI3_9SPHN
SCNpilot_cont_300_bf_scaffold_91_curated_2
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

991..2373
DNA (1383bp) protein (461aa)
mannitol dehydrogenase domain-containing protein; K00040 fructuronate reductase [EC:1.1.1.57]
Fructuronate reductase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C596_9SPHN
Fructuronate reductase {ECO:0000313|EMBL:EIZ78650.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
SCNpilot_cont_300_bf_scaffold_91_curated_3
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2370..3392
DNA (1023bp) protein (341aa)
ribokinase-like domain-containing protein; K00874 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
2-keto-3-deoxygluconate kinase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J359_9SPHN
2-keto-3-deoxygluconate kinase {ECO:0000313|EMBL:EQB18565.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
SCNpilot_cont_300_bf_scaffold_91_curated_4
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3422..4876
DNA (1455bp) protein (485aa)
carboxylesterase (EC:3.1.1.1); K03929 para-nitrobenzyl esterase [EC:3.1.1.-]
Carboxylic ester hydrolase; EC=3.1.1.-;; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
Carboxylesterase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F3C4_SPHCR
SCNpilot_cont_300_bf_scaffold_91_curated_5
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(4873..6063)
DNA (1191bp) protein (397aa)
Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01UV0_SOLUE
mandelate racemase/muconate lactonizing protein
Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein {ECO:0000313|EMBL:ABJ86570.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_cont_300_bf_scaffold_91_curated_6
Colletotrichum fioriniae, Colletotrichum, Glomerellales, Hypocreomycetidae, Ascomycota, Fungi

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6268..7299
DNA (1032bp) protein (344aa)
Beta-lactamase domain protein n=1 Tax=Colletotrichum gloeosporioides (strain Nara gc5) RepID=L2G4M6_COLGN
Uncharacterized protein {ECO:0000313|EMBL:EXF75037.1}; TaxID=1445577 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Glomerellaceae; Colletotrichum.;" source="Colletotrichum fioriniae PJ7.;"
AO090009000143; hypothetical protein
SCNpilot_cont_300_bf_scaffold_91_curated_7
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7356..10262)
DNA (2907bp) protein (969aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI00028A2BE2
TonB-dependent receptor {ECO:0000313|EMBL:EZP57402.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_91_curated_8
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10660..11577
DNA (918bp) protein (306aa)
Probable 5-dehydro-4-deoxyglucarate dehydratase {ECO:0000256|HAMAP-Rule:MF_00694}; EC=4.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00694};; 5-keto-4-deoxy-glucarate dehydratase {ECO:0000256|HAMAP-Rule:MF_00694}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
5-dehydro-4-deoxyglucarate dehydratase (EC:4.2.1.41); K01707 5-dehydro-4-deoxyglucarate dehydratase [EC:4.2.1.41]
Probable 5-dehydro-4-deoxyglucarate dehydratase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VWT5_9SPHN
SCNpilot_cont_300_bf_scaffold_91_curated_9
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11577..12905
DNA (1329bp) protein (443aa)
gudD; glucarate dehydratase (EC:4.2.1.40); K01706 glucarate dehydratase [EC:4.2.1.40]
Glucarate dehydratase {ECO:0000313|EMBL:EED98708.1}; EC=4.2.1.40 {ECO:0000313|EMBL:EED98708.1};; TaxID=513051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CGD1.;"
glucarate dehydratase n=1 Tax=Pseudomonas pyrrocinia RepID=UPI0002E4E3B4
SCNpilot_cont_300_bf_scaffold_91_curated_10
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12991..14103)
DNA (1113bp) protein (371aa)
Mannonate dehydratase {ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|SAAS:SAAS00189414};; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
D-mannonate dehydratase (EC:4.2.1.8); K01686 mannonate dehydratase [EC:4.2.1.8]
D-mannonate dehydratase n=1 Tax=Caulobacter sp. AP07 RepID=J2QC42_9CAUL
SCNpilot_cont_300_bf_scaffold_91_curated_11
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14197..15084)
DNA (888bp) protein (296aa)
Transcriptional regulator, LysR family n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IJ42_METNO
LysR family transcriptional regulator {ECO:0000313|EMBL:AIQ89929.1}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_91_curated_12
Pseudomonas resinovorans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15134..16402)
DNA (1269bp) protein (423aa)
gudD; glucarate dehydratase (EC:4.2.1.40)
Glucarate dehydratase {ECO:0000313|EMBL:BAN46364.1}; EC=4.2.1.40 {ECO:0000313|EMBL:BAN46364.1};; TaxID=1245471 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas resinovorans NBRC 106553.;"
Glucarate dehydratase n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6BBC4_PSERE
SCNpilot_cont_300_bf_scaffold_91_curated_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16560..17711
DNA (1152bp) protein (384aa)
Mandelate racemase/muconate lactonizing enzyme n=2 Tax=Streptomyces hygroscopicus subsp. jinggangensis RepID=H2JV15_STRHJ
Strain MEJ076 contig_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ05553.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
mandelate racemase/muconate lactonizing enzyme
SCNpilot_cont_300_bf_scaffold_91_curated_14
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17711..19033
DNA (1323bp) protein (441aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI000316D6B0
d-galactonate transporter; K03535 MFS transporter, ACS family, glucarate transporter
D-galactonate transporter {ECO:0000313|EMBL:EUC19485.1}; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. BT03.;"
SCNpilot_cont_300_bf_scaffold_91_curated_15
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19085..20122)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Colletotrichum gloeosporioides (strain Cg-14) RepID=T0K801_COLGC
Putative metallo-beta-lactamase {ECO:0000313|EMBL:KHS45073.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
metallo-beta-lactamase superfamily protein
SCNpilot_cont_300_bf_scaffold_91_curated_16
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20305..21198)
DNA (894bp) protein (298aa)
rfbD; dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133); K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
dTDP-4-dehydrorhamnose reductase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248B219
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:KHL26493.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
SCNpilot_cont_300_bf_scaffold_91_curated_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21195..21353)
DNA (159bp) protein (53aa)
rffB; dTDP-D-glucose-4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262B9B0
SCNpilot_cont_300_bf_scaffold_91_curated_18
unknown

Not on your lists

21765..21932
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_91_curated_19
Acaryochloris marina, Acaryochloris, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(21973..23580)
DNA (1608bp) protein (536aa)
Uncharacterized protein n=1 Tax=Acaryochloris marina (strain MBIC 11017) RepID=B0CE60_ACAM1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW25694.1}; TaxID=329726 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Acaryochloris.;" source="Acaryochloris marina (strain MBIC 11017).;"
SCNpilot_cont_300_bf_scaffold_91_curated_20
unknown

Not on your lists

comp(23675..24256)
DNA (582bp) protein (194aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_91_curated_21
Mariprofundus ferrooxydans, Mariprofundus, Mariprofundales, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24293..26008)
DNA (1716bp) protein (572aa)
CAAX amino terminal protease family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F232_9PROT
CAAX amino terminal protease family protein {ECO:0000313|EMBL:EAU55718.1}; TaxID=314345 species="Bacteria; Proteobacteria; Zetaproteobacteria; Mariprofundales; Mariprofundaceae; Mariprofundus.;" source="Mariprofundus ferrooxydans PV-1.;"
abortive infection protein
SCNpilot_cont_300_bf_scaffold_91_curated_22
unknown

Not on your lists

comp(26008..27345)
DNA (1338bp) protein (446aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_91_curated_23
unknown

Not on your lists

comp(27593..27784)
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_91_curated_24
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27799..29238)
DNA (1440bp) protein (480aa)
Sugar transferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3C0_NOVAD
sugar transferase
Sugar transferase {ECO:0000313|EMBL:ABD27653.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_91_curated_25
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29277..29882)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PAP7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE52345.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
chloramphenicol acetyltransferase
SCNpilot_cont_300_bf_scaffold_91_curated_26
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29879..30952)
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI000363B900
acyltransferase 3
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_300_bf_scaffold_91_curated_27
unknown

Not on your lists

comp(30970..31500)
DNA (531bp) protein (177aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_91_curated_28
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31507..32475)
DNA (969bp) protein (323aa)
Glycosyl transferase, family 2 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJ19_NITHX
glycosyl transferase family protein
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABE63778.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_91_curated_29
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32510..33559)
DNA (1050bp) protein (350aa)
Acyltransferase 3 n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YB98_MESOW
Uncharacterized protein {ECO:0000313|EMBL:AHE57208.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
acyltransferase 3
SCNpilot_cont_300_bf_scaffold_91_curated_30
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33608..34693)
DNA (1086bp) protein (362aa)
Uncharacterized protein {ECO:0000313|EMBL:AHE56449.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
Putative uncharacterized protein id=3653072 bin=GWA2_OP3_52_12 species=Lyngbya sp. PCC 8106 genus=Lyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
Displaying items 1-30 of 167 in total

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