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SCNpilot_cont_300_bf_scaffold_68_curated

Search features with annotation key words

Displaying items 1-30 of 215 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_68_curated_1
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..166
DNA (165bp) protein (55aa)
2-nitropropane dioxygenase; K00459 nitronate monooxygenase [EC:1.13.12.16]
2-nitropropane dioxygenase, NPD n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GSM1_SPHAL
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_cont_300_bf_scaffold_68_curated_2
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

230..2299
DNA (2070bp) protein (690aa)
alcohol dehydrogenase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036367EE
Alcohol dehydrogenase {ECO:0000313|EMBL:KFD29413.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
alcohol dehydrogenase (acceptor)
SCNpilot_cont_300_bf_scaffold_68_curated_3
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2397..3119
DNA (723bp) protein (241aa)
Transcriptional regulator n=1 Tax=Sphingobium sp. AP49 RepID=J2WQ23_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:EJK85078.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
regulatory protein TetR
SCNpilot_cont_300_bf_scaffold_68_curated_4
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3238..4041
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D1Y4_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU72992.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
enoyl-CoA hydratase/isomerase
SCNpilot_cont_300_bf_scaffold_68_curated_5
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4046..4687
DNA (642bp) protein (214aa)
Flavin reductase domain protein FMN-binding protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EY08_SPHCR
flavin reductase domain-containing protein
Flavin reductase domain protein FMN-binding protein {ECO:0000313|EMBL:AEG48290.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_cont_300_bf_scaffold_68_curated_6
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4849..7248
DNA (2400bp) protein (800aa)
formyl-CoA transferase (EC:2.8.3.16)
formyl-CoA transferase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000372C7F7
Uncharacterized protein {ECO:0000313|EMBL:EKU72994.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
SCNpilot_cont_300_bf_scaffold_68_curated_7
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7276..8280
DNA (1005bp) protein (335aa)
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase n=1 Tax=Sphingobium sp. AP49 RepID=J2D5T0_9SPHN
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase {ECO:0000313|EMBL:KEZ18496.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
luciferase-like protein
SCNpilot_cont_300_bf_scaffold_68_curated_8
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8293..8934
DNA (642bp) protein (214aa)
Putative uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EY11_SPHCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG48293.1}; Flags: Precursor;; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_cont_300_bf_scaffold_68_curated_9
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8937..10403
DNA (1467bp) protein (489aa)
Carboxylic ester hydrolase; EC=3.1.1.-;; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
carboxylesterase type B; K03929 para-nitrobenzyl esterase [EC:3.1.1.-]
carboxylesterase n=1 Tax=Spongiibacter tropicus RepID=UPI0003B49C38
SCNpilot_cont_300_bf_scaffold_68_curated_10
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10400..10813)
DNA (414bp) protein (138aa)
Putative nucleic-acid-binding protein containing a Zn-ribbon n=1 Tax=Sphingobium sp. AP49 RepID=J2WS74_9SPHN
Putative nucleic-acid-binding protein containing a Zn-ribbon {ECO:0000313|EMBL:EJK85070.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_68_curated_11
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10817..11968)
DNA (1152bp) protein (384aa)
thiolase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C298
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KEZ18491.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
thiolase
SCNpilot_cont_300_bf_scaffold_68_curated_12
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11965..14037)
DNA (2073bp) protein (691aa)
3-hydroxybutyryl-CoA epimerase (EC:5.1.2.3); K07516 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C299
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:KEZ18490.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_cont_300_bf_scaffold_68_curated_13
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14024..16081)
DNA (2058bp) protein (686aa)
PQQ-dependent dehydrogenase, methanol/ethanol family n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EYD3_SPHCR
Alcohol dehydrogenase {ECO:0000313|EMBL:AJR25189.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
PQQ-dependent dehydrogenase methanol/ethanol family protein
SCNpilot_cont_300_bf_scaffold_68_curated_14
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16087..17625)
DNA (1539bp) protein (513aa)
o-succinylbenzoate--CoA ligase (EC:6.2.1.26)
acyl-CoA ligase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C29B
Uncharacterized protein {ECO:0000313|EMBL:EKU73003.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
SCNpilot_cont_300_bf_scaffold_68_curated_15
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17662..18978)
DNA (1317bp) protein (439aa)
Arabinose efflux permease family protein n=1 Tax=Sphingobium sp. AP49 RepID=J2WS70_9SPHN
Arabinose efflux permease family protein {ECO:0000313|EMBL:KEZ18487.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
major facilitator superfamily protein
SCNpilot_cont_300_bf_scaffold_68_curated_16
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18995..20224)
DNA (1230bp) protein (410aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D630_SPHYA
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KEZ18486.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_cont_300_bf_scaffold_68_curated_17
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20255..20989)
DNA (735bp) protein (245aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
3-oxoacyl-ACP reductase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036E642B
Uncharacterized protein {ECO:0000313|EMBL:EKU73006.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
SCNpilot_cont_300_bf_scaffold_68_curated_18
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21007..22029)
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D1Z8_SPHYA
Putative aminoglycoside phosphotransferase {ECO:0000313|EMBL:KEZ18484.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
aminoglycoside phosphotransferase; K06979
SCNpilot_cont_300_bf_scaffold_68_curated_19
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22125..22841
DNA (717bp) protein (239aa)
Transcriptional regulator n=1 Tax=Sphingobium sp. AP49 RepID=J2LC95_9SPHN
TetR family transcriptional regulator {ECO:0000313|EMBL:AJR25194.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
regulatory protein TetR
SCNpilot_cont_300_bf_scaffold_68_curated_20
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22859..25249
DNA (2391bp) protein (797aa)
FO synthase subunit 1; K11779 FO synthase [EC:2.5.1.-]
FO synthase subunit 1 n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EYE0_SPHCR
FO synthase subunit 1 {ECO:0000313|EMBL:KEQ52269.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
SCNpilot_cont_300_bf_scaffold_68_curated_21
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25239..25898
DNA (660bp) protein (220aa)
NADPH-dependent F420 reductase n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D631_SPHYA
NADPH-dependent F420 reductase {ECO:0000313|EMBL:EKU73010.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
NADPH-dependent F420 reductase; K06988
SCNpilot_cont_300_bf_scaffold_68_curated_22
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25905..26672
DNA (768bp) protein (256aa)
coenzyme F420-0 gamma-glutamyl ligase (EC:6.3.2.-); K12234 coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34]
Gamma-glutamyl ligase n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CQ34_SPHYA
Gamma-glutamyl ligase {ECO:0000313|EMBL:KEZ18480.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_cont_300_bf_scaffold_68_curated_23
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26669..27598
DNA (930bp) protein (310aa)
2-phospho-L-lactate transferase (EC:2.7.1.-); K11212 LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28]
LPPG:FO 2-phospho-L-lactate transferase n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D202_SPHYA
LPPG:FO 2-phospho-L-lactate transferase {ECO:0000313|EMBL:EKU73012.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
SCNpilot_cont_300_bf_scaffold_68_curated_24
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27603..28187
DNA (585bp) protein (195aa)
hypothetical protein; K14941 2-phospho-L-lactate guanylyltransferase [EC:2.7.7.68]
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000361CE8B
2-phospho-L-lactate guanylyltransferase {ECO:0000313|EMBL:KFD29390.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_cont_300_bf_scaffold_68_curated_25
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28262..29434
DNA (1173bp) protein (391aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA acetyltransferase n=1 Tax=Sphingobium sp. AP49 RepID=J2WQ08_9SPHN
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:EJK85058.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
SCNpilot_cont_300_bf_scaffold_68_curated_26
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29685..31355)
DNA (1671bp) protein (557aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1); K14448 (2S)-methylsuccinyl-CoA dehydrogenase
PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C17E34
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KFD29388.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_cont_300_bf_scaffold_68_curated_27
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31352..32215)
DNA (864bp) protein (288aa)
enoyl-CoA hydratase/isomerase; K01692 enoyl-CoA hydratase [EC:4.2.1.17]
Enoyl-CoA hydratase/isomerase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EU61_SPHCR
Enoyl-CoA hydratase {ECO:0000313|EMBL:AJR24969.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
SCNpilot_cont_300_bf_scaffold_68_curated_28
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32230..33012)
DNA (783bp) protein (261aa)
3-hydroxy-2-methylbutyryl-CoA dehydrogenase (EC:1.1.1.178)
Uncharacterized protein n=2 Tax=Sphingobium RepID=J2WRZ0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EKU73017.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
SCNpilot_cont_300_bf_scaffold_68_curated_29
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33024..34256)
DNA (1233bp) protein (411aa)
formyl-CoA transferase (EC:2.8.3.16)
CoA transferase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C2AA
CoA-transferase {ECO:0000313|EMBL:AJR24971.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
SCNpilot_cont_300_bf_scaffold_68_curated_30
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34511..35377
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D637_SPHYA
Permease {ECO:0000313|EMBL:KFD29383.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
Displaying items 1-30 of 215 in total

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