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SCNpilot_cont_300_bf_scaffold_595_curated

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_595_curated_1
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..164
DNA (162bp) protein (54aa)
2-nitropropane dioxygenase; K00459 nitronate monooxygenase [EC:1.13.12.16]
2-nitropropane dioxygenase NPD n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VN41_CAUST
2-nitropropane dioxygenase NPD {ECO:0000313|EMBL:ADG11914.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_595_curated_2
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(150..779)
DNA (630bp) protein (210aa)
MarC family transcriptional regulator n=1 Tax=Sphingomonas RepID=UPI0002882623
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
multiple antibiotic resistance (MarC)-like protein; K05595 multiple antibiotic resistance protein
SCNpilot_cont_300_bf_scaffold_595_curated_3
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(821..1516)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HUG6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK89689.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_595_curated_4
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1516..2430)
DNA (915bp) protein (305aa)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (EC:3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
Bifunctional protein FolD n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=FOLD_NOVAD rbh
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
SCNpilot_cont_300_bf_scaffold_595_curated_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2427..2720)
DNA (294bp) protein (98aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium RepID=F6IGE4_9SPHN
Integral membrane protein yggT {ECO:0000313|EMBL:GAO54560.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein; K02221 YggT family protein
SCNpilot_cont_300_bf_scaffold_595_curated_6
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2921..3793
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0H2B7_9SPHN
TonB family protein
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_cont_300_bf_scaffold_595_curated_7
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3797..4708)
DNA (912bp) protein (304aa)
acetylglutamate kinase (EC:2.7.2.8); K00930 acetylglutamate kinase [EC:2.7.2.8]
Acetylglutamate kinase {ECO:0000255|HAMAP-Rule:MF_00082}; EC=2.7.2.8 {ECO:0000255|HAMAP-Rule:MF_00082};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000255|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000255|HAMAP-Rule:MF_00082}; Short=AGK {ECO:0000255|HAMAP-Rule:MF_00082};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Acetylglutamate kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=ARGB_NOVAD rbh
SCNpilot_cont_300_bf_scaffold_595_curated_8
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4751..5422)
DNA (672bp) protein (224aa)
Membrane protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HUH1_9SPHN
hypothetical protein
Membrane protein {ECO:0000313|EMBL:EQB15783.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
SCNpilot_cont_300_bf_scaffold_595_curated_9
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5722..6402)
DNA (681bp) protein (227aa)
gmk; guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8]
Guanylate kinase {ECO:0000255|HAMAP-Rule:MF_00328}; EC=2.7.4.8 {ECO:0000255|HAMAP-Rule:MF_00328};; GMP kinase {ECO:0000255|HAMAP-Rule:MF_00328}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
guanylate kinase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002E287AC
SCNpilot_cont_300_bf_scaffold_595_curated_10
unknown

Not on your lists

comp(6446..6709)
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_595_curated_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6716..7213)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZ33_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD50654.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein; K09985 hypothetical protein
SCNpilot_cont_300_bf_scaffold_595_curated_12
unknown

Not on your lists

comp(7245..7487)
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_595_curated_13
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7561..8169
DNA (609bp) protein (203aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19); K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HY89_9SPHN
SCNpilot_cont_300_bf_scaffold_595_curated_14
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8162..8782
DNA (621bp) protein (207aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;
hisH; imidazole glycerol phosphate synthase subunit HisH (EC:2.4.2.-); K02501 glutamine amidotransferase [EC:2.4.2.-]
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YB29_9SPHN
SCNpilot_cont_300_bf_scaffold_595_curated_15
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8784..9512
DNA (729bp) protein (243aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphi
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16); K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZZ91_9SPHN
SCNpilot_cont_300_bf_scaffold_595_curated_16
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9757..10521
DNA (765bp) protein (255aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
cyclase HisF (EC:4.1.3.-); K02500 cyclase [EC:4.1.3.-]
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Novosphingobium sp. AP12 RepID=J2PA19_9SPHN
SCNpilot_cont_300_bf_scaffold_595_curated_17
unknown

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10653..10850
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_595_curated_18
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10903..11241
DNA (339bp) protein (113aa)
Phosphoribosyl-ATP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071052}; Short=PRA-PH {ECO:0000256|HAMAP-Rule:MF_01020};; EC=3.6.1.31 {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071044};; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
hisE; phosphoribosyl-ATP pyrophosphohydrolase (EC:3.6.1.31); K01523 phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
Phosphoribosyl-ATP pyrophosphatase n=1 Tax=Sphingobium sp. AP49 RepID=J2L5C4_9SPHN
SCNpilot_cont_300_bf_scaffold_595_curated_19
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11245..11622
DNA (378bp) protein (126aa)
HIT-like protein {ECO:0000313|EMBL:AKH44086.1}; EC=3.-.-.- {ECO:0000313|EMBL:AKH44086.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00035E9176
histidine triad (HIT) protein
SCNpilot_cont_300_bf_scaffold_595_curated_20
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11687..12223
DNA (537bp) protein (179aa)
Acyl-CoA thioester hydrolase YbgC {ECO:0000313|EMBL:AKH44087.1}; EC=3.1.2.- {ECO:0000313|EMBL:AKH44087.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Predicted thioesterase n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N8J2_ERYLH
SCNpilot_cont_300_bf_scaffold_595_curated_21
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12220..12927
DNA (708bp) protein (236aa)
Cell division and transport-associated protein TolQ n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9L4_NOVAD
MotA/TolQ/ExbB proton channel; K03562 biopolymer transport protein TolQ
Cell division and transport-associated protein TolQ {ECO:0000313|EMBL:ABD25459.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_595_curated_22
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12931..13395
DNA (465bp) protein (155aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WFE0_9SPHN
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:EIZ78908.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
biopolymer transport protein ExbD/TolR; K03560 biopolymer transport protein TolR
SCNpilot_cont_300_bf_scaffold_595_curated_23
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13400..14410
DNA (1011bp) protein (337aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZBX5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD57949.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_595_curated_24
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14407..15807
DNA (1401bp) protein (467aa)
Protein TolB n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J1Q7_9SPHN
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
translocation protein TolB; K03641 TolB protein
SCNpilot_cont_300_bf_scaffold_595_curated_25
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15877..16419
DNA (543bp) protein (181aa)
Peptidoglycan-associated protein n=2 Tax=Novosphingobium RepID=F6IJX9_9SPHN
peptidoglycan-associated protein; K03640 peptidoglycan-associated lipoprotein
Peptidoglycan-associated protein {ECO:0000313|EMBL:EHJ62014.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_cont_300_bf_scaffold_595_curated_26
unknown

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comp(16494..16682)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_595_curated_27
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16818..17282
DNA (465bp) protein (155aa)
Heat shock protein DnaJ-like protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C526_9SPHN
Heat shock protein DnaJ-like protein {ECO:0000313|EMBL:EIZ78912.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
molecular chaperone DnaJ
SCNpilot_cont_300_bf_scaffold_595_curated_28
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17551..18411)
DNA (861bp) protein (287aa)
EamA-like transporter family n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YEJ6_9BRAD
Transporter {ECO:0000313|EMBL:KFL32669.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_595_curated_29
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18515..19897
DNA (1383bp) protein (461aa)
Putative transcriptional regulatory protein (GntR family, N-term) with a PLP-dependent aminotransferase domain (C-term) n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AXK1_AZOBR
putative transcriptional regulatory protein (GntR family, N-term) with a PLP-dependent aminotransferase domain (C-term)
Putative transcriptional regulatory protein (GntR family, N-term) with a PLP-dependent aminotransferase domain (C-term) {ECO:0000313|EMBL:CCD02610.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_cont_300_bf_scaffold_595_curated_30
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19964..21190
DNA (1227bp) protein (409aa)
NAD(P)H-nitrite reductase n=1 Tax=Novosphingobium sp. AP12 RepID=J2GPC2_9SPHN
NAD(P)H-nitrite reductase {ECO:0000313|EMBL:EZP76589.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Displaying items 1-30 of 44 in total

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