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SCNpilot_cont_300_bf_scaffold_439_curated

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Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_439_curated_1
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47..331
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HHL3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB12527.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
antirestriction protein ArdC
SCNpilot_cont_300_bf_scaffold_439_curated_2
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

328..729
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0GYE0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KKC23874.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_439_curated_3
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

889..2754
DNA (1866bp) protein (622aa)
chromosome partitioning protein ParB n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262B6AB
ParB-like protein {ECO:0000313|EMBL:KEQ53286.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
ParB-like protein; K03497 chromosome partitioning protein, ParB family
SCNpilot_cont_300_bf_scaffold_439_curated_4
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2873..3337
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037C61F4
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_cont_300_bf_scaffold_439_curated_5
unknown

Not on your lists

3330..3443
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_439_curated_6
Exiguobacterium sp. S17, Exiguobacterium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3597..4106
DNA (510bp) protein (170aa)
ROS/MUCR transcriptional regulator family protein n=1 Tax=Exiguobacterium sp. S17 RepID=S3FIF2_9BACL
ROS/MUCR transcriptional regulator family protein {ECO:0000313|EMBL:EPE62010.1}; TaxID=856854 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium.;" source="Exiguobacterium sp. S17.;"
MucR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_439_curated_7
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4109..4330)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3T256_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:BAR54380.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_439_curated_8
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4330..5958)
DNA (1629bp) protein (543aa)
Transposase IS66 n=2 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0H915_9SPHN
Transposase IS66 {ECO:0000313|EMBL:EQB09522.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
transposase IS66
SCNpilot_cont_300_bf_scaffold_439_curated_9
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6057..6404)
DNA (348bp) protein (116aa)
transposase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CAD2A
Scaffold41, whole genome shotgun sequence {ECO:0000313|EMBL:KIS29948.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
IS66 Orf2 like; K07484 transposase
SCNpilot_cont_300_bf_scaffold_439_curated_10
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8245..8565
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D578_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:KFL46105.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_439_curated_11
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8763..9032
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z5D3_SPHJU
Uncharacterized protein {ECO:0000313|EMBL:AHE55584.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_439_curated_12
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9001..9645
DNA (645bp) protein (215aa)
Conjugal transfer protein TraF n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z5D2_SPHJU
Uncharacterized protein {ECO:0000313|EMBL:AHE55585.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
traF; conjugal transfer protein TraF
SCNpilot_cont_300_bf_scaffold_439_curated_13
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9633..10331
DNA (699bp) protein (233aa)
Putative lytic transglycosylase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGJ8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE55586.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
putative lytic transglycosylase
SCNpilot_cont_300_bf_scaffold_439_curated_14
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10674..12683
DNA (2010bp) protein (670aa)
Conjugal transfer protein TraI n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJS9_9SPHN
Conjugal transfer protein TraI {ECO:0000313|EMBL:KEQ53278.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
conjugal transfer protein TraI
SCNpilot_cont_300_bf_scaffold_439_curated_15
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13030..14304)
DNA (1275bp) protein (425aa)
putative glycosyltransferase; K14335 alpha-1,6-mannosyltransferase [EC:2.4.1.-]
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003728C8F
Uncharacterized protein {ECO:0000313|EMBL:CCW16480.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
SCNpilot_cont_300_bf_scaffold_439_curated_16
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14306..14830)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003806BD1
Uncharacterized protein {ECO:0000313|EMBL:CCW16481.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_439_curated_17
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15984..17918
DNA (1935bp) protein (645aa)
Uncharacterized protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RQV6_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_300_bf_scaffold_439_curated_18
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17948..18709)
DNA (762bp) protein (254aa)
exonuclease; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
DNA polymerase III epsilon subunit and related 3'-5' exonuclease n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCK1_9SPHN
DNA polymerase III epsilon subunit and related 3'-5' exonuclease {ECO:0000313|EMBL:EAT08889.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
SCNpilot_cont_300_bf_scaffold_439_curated_19
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19011..19928
DNA (918bp) protein (306aa)
Putative nucleotidyltransferase n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z5C5_SPHJU
Putative nucleotidyltransferase {ECO:0000313|EMBL:KEQ53265.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
putative nucleotidyltransferase
SCNpilot_cont_300_bf_scaffold_439_curated_20
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20093..22114
DNA (2022bp) protein (674aa)
conjugal transfer protein TraG n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248B1ED
Conjugal transfer protein TraG {ECO:0000313|EMBL:KEQ53264.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
traG; conjugal transfer protein TraG; K03205 type IV secretion system protein VirD4
SCNpilot_cont_300_bf_scaffold_439_curated_21
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22111..22542
DNA (432bp) protein (144aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJS3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE55605.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_439_curated_22
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22539..23579
DNA (1041bp) protein (347aa)
Conjugal transfer protein TrbB n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJS2_9SPHN
conjugal transfer protein TrbB; K03196 type IV secretion system protein VirB11
Conjugal transfer protein TrbB {ECO:0000313|EMBL:BAK67280.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_300_bf_scaffold_439_curated_23
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23576..23911
DNA (336bp) protein (112aa)
conjugal transfer protein TrbC n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000366C078
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_cont_300_bf_scaffold_439_curated_24
Mesorhizobium sp. L2C085B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23908..24180
DNA (273bp) protein (91aa)
UPI0003D00E3E related cluster n=1 Tax=unknown RepID=UPI0003D00E3E
Conjugal transfer protein TrbD {ECO:0000313|EMBL:ESZ12377.1}; TaxID=1287117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C085B000.;"
conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
SCNpilot_cont_300_bf_scaffold_439_curated_25
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24174..26618
DNA (2445bp) protein (815aa)
conjugal transfer protein TrbE n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037D4A75
conjugal transfer protein TrbE; K03199 type IV secretion system protein VirB4
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_cont_300_bf_scaffold_439_curated_26
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26660..27436
DNA (777bp) protein (259aa)
Conjugal transfer protein TrbJ n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH66_9SPHN
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:ENY82796.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TrbJ
SCNpilot_cont_300_bf_scaffold_439_curated_27
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27619..28941
DNA (1323bp) protein (441aa)
Conjugal transfer protein TrbL n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA5_9SPHN
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
Conjugal transfer protein TrbL {ECO:0000313|EMBL:BAK67275.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_300_bf_scaffold_439_curated_28
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28943..29758
DNA (816bp) protein (272aa)
Conjugal transfer protein TrbF n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA4_9SPHN
Conjugal transfer protein TrbF {ECO:0000313|EMBL:KHK91877.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
SCNpilot_cont_300_bf_scaffold_439_curated_29
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29755..30783
DNA (1029bp) protein (343aa)
Conjugal transfer protein TrbG n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA3_9SPHN
conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9
Conjugal transfer protein TrbG {ECO:0000313|EMBL:BAK67273.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_300_bf_scaffold_439_curated_30
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30780..32069
DNA (1290bp) protein (430aa)
conjugal transfer protein TrbI n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AB85
conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
Displaying items 1-30 of 50 in total

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