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SCNpilot_cont_300_bf_scaffold_36_curated

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Displaying items 1-30 of 432 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_36_curated_1
Oceanibulbus indolifex, Oceanibulbus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

184..660
DNA (477bp) protein (159aa)
Nodulation protein N n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9DWP8_9RHOB
Nodulation protein N {ECO:0000313|EMBL:EDQ06061.1}; TaxID=391624 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanibulbus.;" source="Oceanibulbus indolifex HEL-45.;"
MaoC domain-containing protein dehydratase
SCNpilot_cont_300_bf_scaffold_36_curated_2
Massilia consociata, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

744..1838
DNA (1095bp) protein (365aa)
alpha-methylacyl-CoA racemase (EC:5.1.99.4); K01796 alpha-methylacyl-CoA racemase [EC:5.1.99.4]
Carnitine dehydratase {ECO:0000313|EMBL:KFI06239.1}; TaxID=760117 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia consociata.;"
Alpha-methylacyl-CoA racemase id=4145013 bin=GWF2_Methylomirabilis_70_14 species=Streptomyces sp. e14 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
SCNpilot_cont_300_bf_scaffold_36_curated_3
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1853..2764)
DNA (912bp) protein (304aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
2-dehydropantoate 2-reductase; K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169]
2-dehydropantoate 2-reductase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QG98_9BRAD
SCNpilot_cont_300_bf_scaffold_36_curated_4
bacterium YEK0313, Bacteria

Not on your lists

2949..3959
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G297_HERAR
Tripartite tricarboxylate transporter family receptor {ECO:0000313|EMBL:CEJ09996.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_36_curated_5
Pectobacterium carotovorum, Pectobacterium, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3991..4914
DNA (924bp) protein (308aa)
GntR family transcriptional regulator n=1 Tax=Erwinia carotovora RepID=UPI0001A4462E
LysR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:KFX12089.1}; TaxID=555 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium.;" source="Pectobacterium carotovorum subsp. carotovorum (Erwinia carotovora; subsp. carotovora).;"
SCNpilot_cont_300_bf_scaffold_36_curated_6
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5005..6054
DNA (1050bp) protein (350aa)
vitamin-B12 independent methionine synthase; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Sandarakinorhabdus limnophila RepID=UPI0003B34B87
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCNpilot_cont_300_bf_scaffold_36_curated_7
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(6061..6537)
DNA (477bp) protein (159aa)
Putative integral membrane protein n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WKR8_9CYAN
Membrane protein {ECO:0000313|EMBL:KIJ84167.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_36_curated_8
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6698..7927
DNA (1230bp) protein (410aa)
D-amino acid dehydrogenase (EC:1.4.99.1); K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
Putative oxidoreductase protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1A3_9RHOB
Putative oxidoreductase protein {ECO:0000313|EMBL:EAV41288.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
SCNpilot_cont_300_bf_scaffold_36_curated_9
bacterium YEK0313, Bacteria

Not on your lists

comp(7928..9802)
DNA (1875bp) protein (625aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037B200D
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Na+/H+ antiporter NhaA; K03313 Na+:H+ antiporter, NhaA family
SCNpilot_cont_300_bf_scaffold_36_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9902..10573)
DNA (672bp) protein (224aa)
HPP family protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HPY5_9RHIZ
HPP family protein {ECO:0000313|EMBL:KFC67079.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
HPP family protein; K07168 CBS domain-containing membrane protein
SCNpilot_cont_300_bf_scaffold_36_curated_11
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10756..11757
DNA (1002bp) protein (334aa)
Diacylglycerol kinase catalytic subunit n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BBT9_9RHIZ
diacylglycerol kinase catalytic subunit
Diacylglycerol kinase catalytic subunit {ECO:0000313|EMBL:AGK59737.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_300_bf_scaffold_36_curated_12
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12012..12695
DNA (684bp) protein (228aa)
PKHD-type hydroxylase (EC:1.14.11.-); K07336 PKHD-type hydroxylase [EC:1.14.11.-]
PKHD-type hydroxylase BRAO375_2640012 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
PKHD-type hydroxylase BRAO375_2640012 n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SH20_9BRAD
SCNpilot_cont_300_bf_scaffold_36_curated_13
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12692..13495
DNA (804bp) protein (268aa)
TonB-system energizer ExbB n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QAI5_9BRAD
TonB-system energizer ExbB {ECO:0000313|EMBL:EIG56791.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB
SCNpilot_cont_300_bf_scaffold_36_curated_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13499..13954
DNA (456bp) protein (152aa)
TonB system transport protein ExbD n=3 Tax=Rhodopseudomonas palustris RepID=B3QEV8_RHOPT
TonB system transport protein ExbD; K03559 biopolymer transport protein ExbD
TonB system transport protein ExbD {ECO:0000313|EMBL:ADU43509.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_300_bf_scaffold_36_curated_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13951..14724
DNA (774bp) protein (258aa)
Outer membrane transport energization protein TonB n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QN58_NITHX
Energy transducer TonB {ECO:0000313|EMBL:KIZ36795.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
TonB-like
SCNpilot_cont_300_bf_scaffold_36_curated_16
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14730..15722)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7QII9_METSZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ08436.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_300_bf_scaffold_36_curated_17
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15829..16890
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI000370E367
GSCFA domain-containing protein
GSCFA domain protein {ECO:0000313|EMBL:CCJ08435.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_300_bf_scaffold_36_curated_18
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16976..17956)
DNA (981bp) protein (327aa)
Putative uptake protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I7W9_AZOC5
uptake protein
Putative uptake protein {ECO:0000313|EMBL:BAF88174.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_36_curated_19
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18123..18761
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036BEF6B
TetR family transcriptional regulator
TetR family transcriptional regulator {ECO:0000313|EMBL:AGK59295.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_300_bf_scaffold_36_curated_20
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18758..19972
DNA (1215bp) protein (405aa)
RND family efflux transporter MFP subunit n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BFQ2_9RHIZ
RND transporter MFP subunit {ECO:0000313|EMBL:EWY39801.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
RND family efflux transporter MFP subunit
SCNpilot_cont_300_bf_scaffold_36_curated_21
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19972..23091
DNA (3120bp) protein (1040aa)
Acriflavin resistance protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IQ07_METNO
ABC transporter permease {ECO:0000313|EMBL:KFG68615.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
acriflavin resistance protein
SCNpilot_cont_300_bf_scaffold_36_curated_22
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23113..23763
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E5C200
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:BAF89749.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_36_curated_23
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23763..24365
DNA (603bp) protein (201aa)
Methyltransferase type 12 n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G2M7_9BRAD
type 12 methyltransferase
Methyltransferase type 12 {ECO:0000313|EMBL:BAL75014.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_300_bf_scaffold_36_curated_24
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24512..25114
DNA (603bp) protein (201aa)
PadR family transcriptional regulator n=2 Tax=Rhodospirillum rubrum RepID=G2TDH0_RHORU
PadR family transcriptional regulator
Transcriptional regulator, PadR family {ECO:0000313|EMBL:ABC24235.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCNpilot_cont_300_bf_scaffold_36_curated_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25245..26375
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YN48_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC72235.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Two domain protein: PF04304 and PF03401
SCNpilot_cont_300_bf_scaffold_36_curated_26
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26408..27379
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YN47_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM25389.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
bug; ABC transporter substrate-binding protein
SCNpilot_cont_300_bf_scaffold_36_curated_27
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27430..28326
DNA (897bp) protein (299aa)
Transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4YN49_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EIM25391.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
lysR; transcriptional regulator
SCNpilot_cont_300_bf_scaffold_36_curated_28
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28338..29159)
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036B3621
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK50803.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_36_curated_29
bacterium YEK0313, Bacteria

Not on your lists

comp(29211..30200)
DNA (990bp) protein (330aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding n=2 Tax=Methylobacterium RepID=B0U9A7_METS4
Glyoxylate/hydroxypyruvate reductase B {ECO:0000313|EMBL:CEJ10903.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase
SCNpilot_cont_300_bf_scaffold_36_curated_30
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30235..31230)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8II17_AZOC5
TctC {ECO:0000313|EMBL:KFG67028.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
Displaying items 1-30 of 432 in total

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