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SCNpilot_expt_1000_bf_scaffold_1293_curated

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1293_curated_1
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..336)
DNA (336bp) protein (112aa)
Putative DNA repair methyltransferase {ECO:0000313|EMBL:CDM59347.1}; EC=2.1.1.63 {ECO:0000313|EMBL:CDM59347.1};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
methylated-DNA--protein-cysteine methyltransferase; K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
6-O-methylguanine-DNA methyltransferase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036E8079
SCNpilot_expt_1000_bf_scaffold_1293_curated_2
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(409..906)
DNA (498bp) protein (166aa)
membrane protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B3DBAB
Uncharacterized protein {ECO:0000313|EMBL:AJD42893.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1293_curated_3
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

923..1699
DNA (777bp) protein (259aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
nth; endonuclease III; K10773 endonuclease III [EC:4.2.99.18]
Endonuclease III n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JSS4_AGRVS
SCNpilot_expt_1000_bf_scaffold_1293_curated_4
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1704..2411)
DNA (708bp) protein (236aa)
CysZ-like protein n=1 Tax=Rhizobium lupini HPC(L) RepID=K5DSQ9_RHILU
CysZ-like protein {ECO:0000313|EMBL:KGD91942.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
CysZ-like protein
SCNpilot_expt_1000_bf_scaffold_1293_curated_5
unknown

Not on your lists

comp(2474..2764)
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1293_curated_6
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3037..4839
DNA (1803bp) protein (601aa)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067}; Short=Adenase {ECO:0000256|HAMAP-Rule:MF_01518};; Short=Adenine aminase {ECO:0000256|HAMAP-Rule:MF_01518};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067};; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
ade; adenine deaminase; K01486 adenine deaminase [EC:3.5.4.2]
Adenine deaminase n=1 Tax=Rhizobium sp. AP16 RepID=J2CYW9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1293_curated_7
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4847..6430)
DNA (1584bp) protein (528aa)
Putative carbohydrate kinase {ECO:0000313|EMBL:CCE96827.1}; EC=2.7.1.47 {ECO:0000313|EMBL:CCE96827.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Putative carbohydrate kinase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A9A6_RHIFH
putative carbohydrate kinase
SCNpilot_expt_1000_bf_scaffold_1293_curated_8
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6449..7126)
DNA (678bp) protein (226aa)
Hydrolase phosphatase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JAY6_AGRRK
hydrolase phosphatase
Hydrolase {ECO:0000313|EMBL:KEA05612.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_1293_curated_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7148..8629)
DNA (1482bp) protein (494aa)
mtlK; mannitol 2-dehydrogenase; K00045 mannitol 2-dehydrogenase [EC:1.1.1.67]
Mannitol 2-dehydrogenase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JAY7_AGRRK
Mannitol 2-dehydrogenase protein {ECO:0000313|EMBL:ACM27821.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1293_curated_10
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8695..9696)
DNA (1002bp) protein (334aa)
ATP-binding transport protein SmoK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVX2_9RHIZ
ABC transporter family protein {ECO:0000313|EMBL:AID33773.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
ABC transporter; K10230 sorbitol/mannitol transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1293_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9718..10542)
DNA (825bp) protein (275aa)
mannitol ABC transporter permease n=1 Tax=Rhizobium giardinii RepID=UPI00036EF7BE
Sorbitol/mannitol transport inner membrane protein {ECO:0000313|EMBL:EYR80915.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transport system inner membrane protein; K10229 sorbitol/mannitol transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1293_curated_12
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10552..11424)
DNA (873bp) protein (291aa)
UPI0003D05D98 related cluster n=1 Tax=unknown RepID=UPI0003D05D98
Sugar ABC transporter permease {ECO:0000313|EMBL:ESZ13602.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
binding-protein-dependent transport systems inner membrane component; K10228 sorbitol/mannitol transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1293_curated_13
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11609..12919)
DNA (1311bp) protein (437aa)
Sugar ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7F981_9RHIZ
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESX63916.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
ABC-type sugar transport system, periplasmic component
SCNpilot_expt_1000_bf_scaffold_1293_curated_14
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13066..14019)
DNA (954bp) protein (318aa)
Transcriptional regulator with sigma factor-related N-terminal domain-containing protein n=1 Tax=Rhizobium sp. CF080 RepID=J2JMF3_9RHIZ
Putative sugar-binding domain protein {ECO:0000313|EMBL:CDN49405.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
DeoR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1293_curated_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14115..15626)
DNA (1512bp) protein (504aa)
Arylsulfatase A family protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0CAZ2_RHILT
sulfatase
Arylsulfatase A family protein {ECO:0000313|EMBL:EJC76300.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCNpilot_expt_1000_bf_scaffold_1293_curated_16
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15782..16624
DNA (843bp) protein (281aa)
MerR family transcriptional regulator n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI0003701638
MerR family transcriptional regulator
Putative MerR family transcriptional regulator {ECO:0000313|EMBL:CAK05591.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_1293_curated_17
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16687..17577)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J8S8_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:GAJ93933.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1293_curated_18
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17719..18333)
DNA (615bp) protein (205aa)
esterase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036CCC33
Putative esterase {ECO:0000313|EMBL:EJK78332.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
esterase/lipase/thioesterase; K06999 phospholipase/carboxylesterase
SCNpilot_expt_1000_bf_scaffold_1293_curated_19
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18347..19279)
DNA (933bp) protein (311aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6ATZ6_RHILS
glyoxalase/bleomycin resistance protein/dioxygenase; K15975 glyoxalase family protein
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ACS57488.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_1293_curated_20
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19482..20183)
DNA (702bp) protein (234aa)
ung; uracil-DNA glycosylase; K03648 uracil-DNA glycosylase [EC:3.2.2.27]
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148};; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
Uracil-DNA glycosylase n=1 Tax=Rhizobium sp. AP16 RepID=J2W6Z3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1293_curated_21

Not on your lists

comp(20269..21309)
DNA (1041bp) protein (347aa)
egl; endoglucanase precursor; K01179 endoglucanase [EC:3.2.1.4]
PREDICTED: endo-beta-1,4-glucanase B-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C10A55
Endoglucanase {ECO:0000313|EMBL:BAO65799.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_1000_bf_scaffold_1293_curated_22
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21617..22912
DNA (1296bp) protein (432aa)
Lipid A core-O-antigen ligase-like enyme n=1 Tax=Rhizobium sp. AP16 RepID=J2DL90_9RHIZ
waaL; O-antigen ligase WaaL
Uncharacterized protein {ECO:0000313|EMBL:KEA05583.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_1293_curated_23
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22945..24903)
DNA (1959bp) protein (653aa)
dTDP-glucose 4,6-dehydratase protein n=2 Tax=Rhizobium tropici RepID=L0LEA7_RHITR
lpsB2; dTDP-glucose 4,6-dehydratase protein
dTDP-glucose 4,6-dehydratase protein {ECO:0000313|EMBL:AGB69713.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1293_curated_24
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25063..25623)
DNA (561bp) protein (187aa)
Lipid carrier : UDP-N-acetylgalactosaminyltransferase {ECO:0000313|EMBL:CDS53588.1}; EC=2.4.1.- {ECO:0000313|EMBL:CDS53588.1};; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
Galactosyltransferase protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IUF8_HERSS
galactosyltransferase; K13012 O-antigen biosynthesis protein WbqP
SCNpilot_expt_1000_bf_scaffold_1293_curated_25
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25725..26672)
DNA (948bp) protein (316aa)
membrane protein n=1 Tax=Rhizobium meliloti RepID=UPI00037209AD
Putative transmembrane protein {ECO:0000313|EMBL:AHK42975.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
putative transmembrane protein; K15270 S-adenosylmethionine uptake transporter
SCNpilot_expt_1000_bf_scaffold_1293_curated_26
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26739..27218)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TX98_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN85029.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1293_curated_27
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27326..28489
DNA (1164bp) protein (388aa)
UPI0003D02C1E related cluster n=1 Tax=unknown RepID=UPI0003D02C1E
Adenylate cyclase {ECO:0000313|EMBL:ESZ21169.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1293_curated_28
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28479..29822)
DNA (1344bp) protein (448aa)
UDP-N-acetyl-D-glucosamine dehydrogenase n=1 Tax=Rhizobium giardinii RepID=UPI0003675131
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:KEC79099.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
putative nucleotide-sugar dehydrogenase (UDP-glucose/GDP-mannose dehydrogenase)
SCNpilot_expt_1000_bf_scaffold_1293_curated_29
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30074..31420
DNA (1347bp) protein (449aa)
adenylate/guanylate cyclase; K01768 adenylate cyclase [EC:4.6.1.1]
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000379544B
Family 3 adenylate cyclase {ECO:0000313|EMBL:EJJ26792.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_1293_curated_30
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31417..32394
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PUK5_RHIML
Uncharacterized protein {ECO:0000313|EMBL:EDQ32637.2}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
hypothetical protein
Displaying items 1-30 of 38 in total

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