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SCNpilot_expt_1000_bf_scaffold_4412_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4412_curated_1
unknown

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comp(2..97)
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4412_curated_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(114..362)
DNA (249bp) protein (83aa)
Aminotransferase class-III n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UXY4_9RHIZ
Aminotransferase class-III {ECO:0000313|EMBL:ENN86525.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
aminotransferase class-III
SCNpilot_expt_1000_bf_scaffold_4412_curated_3
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1380..2198)
DNA (819bp) protein (273aa)
N-formylglutamate amidohydrolase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X7I4_OCHA4
N-formylglutamate amidohydrolase
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:ABS17188.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_4412_curated_4
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2210..3556)
DNA (1347bp) protein (449aa)
glutamine synthetase catalytic region; K01915 glutamine synthetase [EC:6.3.1.2]
Glutamine synthetase catalytic region n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V669_9RHIZ
Glutamine synthetase catalytic region {ECO:0000313|EMBL:ENN86527.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_4412_curated_5
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3574..3933)
DNA (360bp) protein (120aa)
Isochorismatase hydrolase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X7I2_OCHA4
isochorismatase hydrolase
Isochorismatase hydrolase {ECO:0000313|EMBL:ABS17186.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_4412_curated_6
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3897..4232)
DNA (336bp) protein (112aa)
Isochorismatase hydrolase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X7I2_OCHA4
isochorismatase hydrolase
Isochorismatase hydrolase {ECO:0000313|EMBL:ABS17186.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_4412_curated_7
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4276..5157)
DNA (882bp) protein (294aa)
Transcriptional regulator, RpiR family n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X7I1_OCHA4
RpiR family transcriptional regulator
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:ABS17185.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_4412_curated_8
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5325..7190
DNA (1866bp) protein (622aa)
ABC transporter related n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X7I0_OCHA4
ABC transporter related {ECO:0000313|EMBL:ABS17184.1}; Flags: Precursor;; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
ABC transporter related; K01995 branched-chain amino acid transport system ATP-binding protein; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4412_curated_9
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7210..8364
DNA (1155bp) protein (385aa)
Extracellular ligand-binding receptor n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X7H9_OCHA4
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ABS17183.1}; Flags: Precursor;; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_4412_curated_10
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8413..9171
DNA (759bp) protein (253aa)
ABC transporter related n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X7H8_OCHA4
ABC transporter related; K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ABS17182.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_4412_curated_11
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9194..10081
DNA (888bp) protein (296aa)
Inner-membrane translocator n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X7H7_OCHA4
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ABS17181.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_4412_curated_12
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10071..11456)
DNA (1386bp) protein (462aa)
Diguanylate cyclase n=2 Tax=Ketogulonicigenium vulgare RepID=E3EYS1_KETVY
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:AEM42346.1}; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain WSH-001).;"
SCNpilot_expt_1000_bf_scaffold_4412_curated_13
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12337..14982
DNA (2646bp) protein (882aa)
Carbohydrate-binding protein n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FVX4_RHIML
Carbohydrate-binding protein {ECO:0000313|EMBL:EHK78836.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
carbohydrate-binding protein
SCNpilot_expt_1000_bf_scaffold_4412_curated_14
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16683..17225
DNA (543bp) protein (181aa)
Putative trehalase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXS9_RHITR
putative trehalase
Putative trehalase {ECO:0000313|EMBL:AGB75511.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_4412_curated_15
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17412..18488
DNA (1077bp) protein (359aa)
Putative polyamine ABC transporter, substrate-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LW99_RHITR
putative polyamine ABC transporter, substrate-binding protein
Putative polyamine ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AGB75512.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_4412_curated_16
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18478..19395
DNA (918bp) protein (306aa)
Putative polyamine ABC transporter, permease protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LW61_RHITR
putative polyamine ABC transporter, permease protein
Putative polyamine ABC transporter, permease protein {ECO:0000313|EMBL:AGB75513.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_4412_curated_17
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19392..19598
DNA (207bp) protein (69aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FVX8_RHIML
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EHK78840.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
putative polyamine ABC transporter, permease protein
Displaying 17 items

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