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SCNpilot_expt_1000_bf_scaffold_1500_curated

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1500_curated_1
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1741)
DNA (1740bp) protein (580aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source
kdpB; P-type ATPase, high-affinity potassium transport system, B chain, a phophatase-like domain (EC:3.6.3.9)
Potassium-transporting ATPase B chain n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PMU1_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1500_curated_2
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1767..2015)
DNA (249bp) protein (83aa)
kdpA; potassium-transporting ATPase A subunit (EC:3.6.3.12)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source=
Potassium-transporting ATPase A chain n=2 Tax=Rhizobium etli RepID=Q2K0Q6_RHIEC
SCNpilot_expt_1000_bf_scaffold_1500_curated_3
unknown

Not on your lists

2138..2299
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1500_curated_4
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2576..2836
DNA (261bp) protein (87aa)
Uncharacterised protein {ECO:0000313|EMBL:CRE04857.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
SCNpilot_expt_1000_bf_scaffold_1500_curated_5
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3464..3553)
DNA (90bp) protein (30aa)
Transcriptional regulator n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LV88_RHITR
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGB75147.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1500_curated_6
unknown

Not on your lists

3900..4865
DNA (966bp) protein (322aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1500_curated_7
Janibacter sp. HTCC2649, Janibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5158..5457)
DNA (300bp) protein (100aa)
CarR n=1 Tax=Janibacter sp. HTCC2649 RepID=A3THL8_9MICO
CarR {ECO:0000313|EMBL:EAQ00328.1}; TaxID=313589 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Janibacter.;" source="Janibacter sp. HTCC2649.;"
carR; hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1500_curated_8
Helicobacter suis, Helicobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5448..5612)
DNA (165bp) protein (55aa)
CarR protein n=2 Tax=Helicobacter suis RepID=E7G0X8_9HELI
CarR protein {ECO:0000313|EMBL:EFX42760.1}; TaxID=710393 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.;" source="Helicobacter suis HS1.;"
Os02g0730050; Zinc finger, RING-type domain containing protein.
SCNpilot_expt_1000_bf_scaffold_1500_curated_9
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6280..6501
DNA (222bp) protein (74aa)
aldehyde dehydrogenase n=1 Tax=Rhizobium mongolense RepID=UPI0003B67182
acetaldehyde dehydrogenase
Acetaldehyde dehydrogenase {ECO:0000313|EMBL:AGB75146.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1500_curated_10
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6619..7011
DNA (393bp) protein (131aa)
Hypothetical conserved protein n=2 Tax=Rhizobium etli RepID=B3PP60_RHIE6
hypothetical protein; K09959 hypothetical protein
Hypothetical conserved protein {ECO:0000313|EMBL:ACE92935.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_1000_bf_scaffold_1500_curated_11
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7105..7923)
DNA (819bp) protein (273aa)
enoyl-(acyl carrier protein) reductase; K00459 nitronate monooxygenase [EC:1.13.12.16]
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC466 RepID=V4P232_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ82156.1}; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
SCNpilot_expt_1000_bf_scaffold_1500_curated_12
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8263..9780)
DNA (1518bp) protein (506aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F762_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EHS51380.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
52,8 kDa protein in TAR-I ttuC' 3'region
SCNpilot_expt_1000_bf_scaffold_1500_curated_13
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9793..10287)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F763_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EHS51381.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein; K07794 putative tricarboxylic transport membrane protein
SCNpilot_expt_1000_bf_scaffold_1500_curated_14
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10284..11228)
DNA (945bp) protein (315aa)
TRAP-T family transporter, periplasmic binding protein n=5 Tax=Rhizobium meliloti RepID=F6E714_SINMK
TRAP-T family transporter periplasmic binding protein; K07795 putative tricarboxylic transport membrane protein
Conserved hypothetical exported protein {ECO:0000313|EMBL:CAC49831.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_1500_curated_15
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11427..12506)
DNA (1080bp) protein (360aa)
iron ABC transporter n=1 Tax=Rhizobium meliloti RepID=UPI00037FA10B
putative periplasmic iron-binding signal peptide protein; K02012 iron(III) transport system substrate-binding protein
Putative periplasmic iron-binding signal peptide protein {ECO:0000313|EMBL:CCE99635.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_1500_curated_16
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12593..13291
DNA (699bp) protein (233aa)
Two component response regulator n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q7CWZ7_AGRT5
Putative two-component response regulator {ECO:0000313|EMBL:GAK68900.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
two component response regulator rbh
SCNpilot_expt_1000_bf_scaffold_1500_curated_17
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13288..14691
DNA (1404bp) protein (468aa)
integral membrane sensor signal transduction histidine kinase; K07649 two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
histidine kinase n=1 Tax=Rhizobium giardinii RepID=UPI00036D7748
SCNpilot_expt_1000_bf_scaffold_1500_curated_18
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14695..15333)
DNA (639bp) protein (213aa)
dhaL2; PTS-dependent dihydroxyacetone kinase,ADP-binding subunit (EC:2.7.-.-); K05879 dihydroxyacetone kinase, C-terminal domain [EC:2.7.1.-]
Dihydroxyacetone kinase, phosphoprotein-dependent, L subunit n=1 Tax=Rhizobium sp. CF142 RepID=J1TC86_9RHIZ
Dihydroxyacetone kinase, phosphoprotein-dependent, L subunit {ECO:0000313|EMBL:EJJ29406.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_1500_curated_19
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15354..17444)
DNA (2091bp) protein (697aa)
dihydroxyacetone kinase; K05878 dihydroxyacetone kinase, N-terminal domain [EC:2.7.1.-]
Dihydroxyacetone kinase n=1 Tax=Rhizobium sp. AP16 RepID=J2DEA2_9RHIZ
Dihydroxyacetone kinase DhaK subunit {ECO:0000313|EMBL:GAJ92261.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_expt_1000_bf_scaffold_1500_curated_20
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17588..18229)
DNA (642bp) protein (214aa)
dihydroxyacetone kinase subunit DhaL; K05879 dihydroxyacetone kinase, C-terminal domain [EC:2.7.1.-]
Dihydroxyacetone kinase, L subunit n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X6B9_OCHA4
Dihydroxyacetone kinase, L subunit {ECO:0000313|EMBL:ABS16773.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_1500_curated_21
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18243..19235)
DNA (993bp) protein (331aa)
Glycerone kinase; K05878 dihydroxyacetone kinase, N-terminal domain [EC:2.7.1.-]
Glycerone kinase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X6B8_OCHA4
Dihydroxyacetone kinase {ECO:0000313|EMBL:AHK46174.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_1500_curated_22
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19253..20026)
DNA (774bp) protein (258aa)
short-chain dehydrogenase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037B4A4F
Putative short chain dehydrogenase adh_short {ECO:0000313|EMBL:AHK46173.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
short chain dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1500_curated_23
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20093..21082)
DNA (990bp) protein (330aa)
Rhizopine ABC transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JN76_AGRRK
mocBch2; rhizopine ABC transporter; K10439 ribose transport system substrate-binding protein
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:EJK88300.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_1500_curated_24
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21204..22208)
DNA (1005bp) protein (335aa)
Ribose ABC transporter permease n=3 Tax=Ochrobactrum RepID=C4WQ47_9RHIZ
Sugar ABC transporter permease {ECO:0000313|EMBL:ERI14535.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
sugar ABC transporter; K10440 ribose transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1500_curated_25
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22261..22845)
DNA (585bp) protein (195aa)
sugar ABC transporter; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
ABC transporter n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UVG8_9RHIZ
ABC transporter {ECO:0000313|EMBL:ENN85660.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Displaying 25 items

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