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SCNpilot_expt_1000_bf_scaffold_3195_curated

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3195_curated_1
unknown

Not on your lists

comp(1..69)
DNA (69bp) protein (23aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3195_curated_2
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

339..1430
DNA (1092bp) protein (364aa)
Amino acid ABC transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JMP9_AGRRK
braC1; amino acid ABC transporter; K01999 branched-chain amino acid transport system substrate-binding protein
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJK88129.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_3195_curated_3
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1505..2398
DNA (894bp) protein (298aa)
Amino acid ABC transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JMQ0_AGRRK
braD; amino acid ABC transporter; K01997 branched-chain amino acid transport system permease protein
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:EJK88130.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_3195_curated_4
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2391..3284
DNA (894bp) protein (298aa)
Branched-chain amino acid ABC transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JMQ1_AGRRK
branched-chain amino acid ABC transporter; K01998 branched-chain amino acid transport system permease protein
ABC-type branched-chain amino acid transport system, permease component {ECO:0000313|EMBL:EJK88131.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_3195_curated_5
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3277..4035
DNA (759bp) protein (253aa)
Branched-chain amino acid ABC transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JMQ2_AGRRK
branched-chain amino acid ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
Amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEA03644.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_3195_curated_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4032..4754
DNA (723bp) protein (241aa)
Amino acid ABC transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JMQ3_AGRRK
braG; amino acid ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
Amino acid ABC transporter {ECO:0000313|EMBL:ACM28834.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_3195_curated_7
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5292..5573
DNA (282bp) protein (94aa)
arylmalonate decarboxylase; K01799 maleate isomerase [EC:5.2.1.1]
Arylmalonate decarboxylase protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JMQ4_AGRRK
Asp/Glu racemase {ECO:0000313|EMBL:KEA03642.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_3195_curated_8
unknown

Not on your lists

comp(5483..6178)
DNA (696bp) protein (232aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3195_curated_9
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6469..7221
DNA (753bp) protein (251aa)
kstD3; putative dehydrogenase flavoprotein (EC:1.3.99.-)
Possible 3-oxosteroid 1-dehydrogenase id=2429414 bin=GWF1_Rhodobacteraceae_65_7 species=Roseomonas cervicalis genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Tax=GWF1_Rhodobacteraceae_65_7_curated
SCNpilot_expt_1000_bf_scaffold_3195_curated_10
Haematobacter massiliensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7302..8057
DNA (756bp) protein (252aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003629034
2-deoxy-D-gluconate 3-dehydrogenase {ECO:0000313|EMBL:KFI27893.1}; TaxID=195105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter massiliensis.;"
SCNpilot_expt_1000_bf_scaffold_3195_curated_11
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8141..9016
DNA (876bp) protein (292aa)
acyl-CoA dehydrogenase domain-containing protein; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
UPI0003CFDDA8 related cluster n=1 Tax=unknown RepID=UPI0003CFDDA8
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ESZ18396.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
SCNpilot_expt_1000_bf_scaffold_3195_curated_12
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9013..9360
DNA (348bp) protein (116aa)
acyl-CoA dehydrogenase domain-containing protein; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
acyl-CoA dehydrogenase n=1 Tax=Amorphus coralli RepID=UPI00035EB210
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KEJ93904.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
SCNpilot_expt_1000_bf_scaffold_3195_curated_13
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9373..10458
DNA (1086bp) protein (362aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000306CCFC
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:CCV12091.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
aminoglycoside phosphotransferase; K06979
SCNpilot_expt_1000_bf_scaffold_3195_curated_14
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10481..10807)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003653547
Nta operon transcriptional regulator {ECO:0000313|EMBL:CCV04243.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3195_curated_15
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11034..12692)
DNA (1659bp) protein (553aa)
dihydrolipoamide dehydrogenase (EC:1.16.1.1)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
Dihydrolipoyl dehydrogenase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5YYR7_PARAH
SCNpilot_expt_1000_bf_scaffold_3195_curated_16
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12697..13995)
DNA (1299bp) protein (433aa)
dehydrogenase catalytic domain-containing protein; K09699 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
Branched-chain alpha-keto acid dehydrogenase E2 component {ECO:0000313|EMBL:ABL72820.1}; EC=2.3.1.168 {ECO:0000313|EMBL:ABL72820.1};; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
branched-chain alpha-keto acid dehydrogenase subunit E2 n=1 Tax=Paracoccus sp. TRP RepID=UPI000225EEF4
SCNpilot_expt_1000_bf_scaffold_3195_curated_17
Haematobacter massiliensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14069..15010)
DNA (942bp) protein (314aa)
transketolase central subunit (EC:1.2.4.1); K00167 2-oxoisovalerate dehydrogenase E1 component, beta subunit [EC:1.2.4.4]
2-oxoisovalerate dehydrogenase subunit beta n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000382CA10
2-oxoisovalerate dehydrogenase {ECO:0000313|EMBL:KFI31228.1}; TaxID=195105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter massiliensis.;"
SCNpilot_expt_1000_bf_scaffold_3195_curated_18
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15012..16238)
DNA (1227bp) protein (409aa)
3-methyl-2-oxobutanoate dehydrogenase (EC:1.2.4.4); K00166 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [EC:1.2.4.4]
Branched-chain alpha-keto acid dehydrogenase E1 component {ECO:0000313|EMBL:ABL72818.1}; EC=1.2.4.4 {ECO:0000313|EMBL:ABL72818.1};; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
Branched-chain alpha-keto acid dehydrogenase E1 component n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BBC4_PARDP
SCNpilot_expt_1000_bf_scaffold_3195_curated_19
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16600..17193)
DNA (594bp) protein (198aa)
UPI0003D026E7 related cluster n=1 Tax=unknown RepID=UPI0003D026E7
Uncharacterized protein {ECO:0000313|EMBL:ESZ03156.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3195_curated_20
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17334..18353
DNA (1020bp) protein (340aa)
Transposase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKB5_9RHIZ
Transposase {ECO:0000313|EMBL:EIM24407.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
putative IS110 family transposase, IS1111 group
SCNpilot_expt_1000_bf_scaffold_3195_curated_21
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19106..19537
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P4C4_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAV40113.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
SCNpilot_expt_1000_bf_scaffold_3195_curated_22
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20178..20888)
DNA (711bp) protein (237aa)
Transposase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A3C1_RHIFH
nmot3; transposase
Transposase {ECO:0000313|EMBL:CCE97869.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_3195_curated_23
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20951..21115)
DNA (165bp) protein (55aa)
IS21 family transposase n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CH89_AGRT5
istA; IS21 family transposase
Transposase {ECO:0000313|EMBL:KJX85408.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_3195_curated_24
unknown

Not on your lists

comp(21319..22209)
DNA (891bp) protein (297aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3195_curated_25
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22789..24387)
DNA (1599bp) protein (533aa)
betA; choline dehydrogenase (EC:1.1.99.1)
Glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:CDH82437.1}; EC=1.1.99.1 {ECO:0000313|EMBL:CDH82437.1};; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037904F3
SCNpilot_expt_1000_bf_scaffold_3195_curated_26
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24384..25025)
DNA (642bp) protein (214aa)
4-phospho-D-erythronate dehydrogenase {ECO:0000313|EMBL:CDH82438.1}; EC=1.1.1.- {ECO:0000313|EMBL:CDH82438.1};; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
4-phospho-D-erythronate dehydrogenase n=2 Tax=Rhizobium meliloti RepID=F7XD40_SINMM
pdxR; 4-phospho-D-erythronate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_3195_curated_27
unknown

Not on your lists

26122..26661
DNA (540bp) protein (180aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3195_curated_28
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26676..28280)
DNA (1605bp) protein (535aa)
betA; choline dehydrogenase, a flavoprotein (EC:1.1.99.1); K00108 choline dehydrogenase [EC:1.1.99.1]
Choline dehydrogenase, a flavoprotein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I7ZGE8_9GAMM
Choline dehydrogenase, a flavoprotein {ECO:0000313|EMBL:EIT70807.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
SCNpilot_expt_1000_bf_scaffold_3195_curated_29
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28291..28983)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003778E05
Uncharacterized protein {ECO:0000313|EMBL:KGF68027.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3195_curated_30
Bacillus aryabhattai, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

29166..30248
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036537A2
rbsB; ribose ABC transporter ribose-binding protein RbsB; K02058 simple sugar transport system substrate-binding protein
LacI family transcriptional regulator {ECO:0000313|EMBL:KJL04307.1}; TaxID=1358420 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus aryabhattai B8W22.;"
Displaying items 1-30 of 41 in total

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