ggKbase home page

SCNpilot_expt_1000_bf_scaffold_5760_curated

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5760_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..542)
DNA (540bp) protein (180aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase MtaD {ECO:0000313|EMBL:EYR79275.1}; EC=3.5.4.28 {ECO:0000313|EMBL:EYR79275.1};; EC=3.5.4.31 {ECO:0000313|EMBL:EYR79275.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
5-methylthioadenosine/S-adenosylhomocysteine deaminase MtaD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYX2_9RHIZ
amidohydrolase
SCNpilot_expt_1000_bf_scaffold_5760_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(603..2321)
DNA (1719bp) protein (573aa)
Glutathione import ATP-binding protein GsiA {ECO:0000313|EMBL:EYR79276.1}; EC=3.6.3.- {ECO:0000313|EMBL:EYR79276.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gsiA3; Glutathione import ATP-binding protein GsiA (EC:3.6.3.-)
Glutathione import ATP-binding protein GsiA n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PIW7_RHIML
SCNpilot_expt_1000_bf_scaffold_5760_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2323..3225)
DNA (903bp) protein (301aa)
Dipeptide transport system permease protein DppC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQJ8_9RHIZ
ABC-type dipeptide/oligopeptide/nickel transport system permease component {ECO:0000313|EMBL:EYR79277.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter permease
SCNpilot_expt_1000_bf_scaffold_5760_curated_4
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3225..4190)
DNA (966bp) protein (322aa)
ABC transporter, periplasmic solute-binding protein n=3 Tax=Rhizobium meliloti RepID=F7XBY7_SINMM
ABC transporter substrate-binding protein; K02033 peptide/nickel transport system permease protein
ABC transporter, periplasmic solute-binding protein {ECO:0000313|EMBL:CDH82498.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
SCNpilot_expt_1000_bf_scaffold_5760_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4350..5531)
DNA (1182bp) protein (394aa)
Periplasmic dipeptide transport protein DppA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNL0_9RHIZ
ABC-type dipeptide transport system periplasmic component {ECO:0000313|EMBL:EYR79279.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_5760_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6092..7456
DNA (1365bp) protein (455aa)
Atrazine chlorohydrolase AtzA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EF10_9RHIZ
Cytosine deaminase {ECO:0000313|EMBL:EYR79280.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative hydrolase protein
SCNpilot_expt_1000_bf_scaffold_5760_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7478..8674
DNA (1197bp) protein (399aa)
N-isopropylammelide isopropyl amidohydrolase AtzC {ECO:0000313|EMBL:EYR79281.1}; EC=3.5.99.4 {ECO:0000313|EMBL:EYR79281.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Hydrolase n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PAD3_RHIML
hydrolase
SCNpilot_expt_1000_bf_scaffold_5760_curated_8
unknown

Not on your lists

comp(8709..9614)
DNA (906bp) protein (302aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5760_curated_9
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9977..10135
DNA (159bp) protein (53aa)
N-ethylammeline chlorohydrolase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HWB5_9RHIZ
N-ethylammeline chlorohydrolase {ECO:0000313|EMBL:EPE97466.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hydrolase
SCNpilot_expt_1000_bf_scaffold_5760_curated_10
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10132..10848
DNA (717bp) protein (239aa)
GntR family transcriptional regulator n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HF26_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:EPE97467.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5760_curated_11
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11193..11807
DNA (615bp) protein (205aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Rhizobium sp. CF080 RepID=J2S9F3_9RHIZ
AraC family transcriptional regulator {ECO:0000313|EMBL:KGE00959.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5760_curated_12
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11966..13876
DNA (1911bp) protein (637aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037104D3
Ferrichrome receptor {ECO:0000313|EMBL:KGE00960.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
fhuA; ferrichrome receptor precursor protein; K02014 iron complex outermembrane recepter protein
Displaying 12 items

View Taxonomy