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SCNpilot_expt_1000_bf_scaffold_6728_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6728_curated_1
Brucella sp. 83/13, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..301
DNA (300bp) protein (100aa)
Extracellular solute-binding protein family 1 n=2 Tax=Brucella RepID=D1D1F7_9RHIZ
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:EEZ34350.1}; TaxID=520449 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. 83/13.;"
sugar ABC transporter periplasmic sugar-binding protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_6728_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

627..1577
DNA (951bp) protein (317aa)
Binding-protein-dependent transport system inner membrane component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMG7_9RHIZ
ABC-type sugar transport system permease component {ECO:0000313|EMBL:EYR77784.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transport system inner membrane protein; K02025 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_6728_curated_3
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1588..2427
DNA (840bp) protein (280aa)
sugar ABC transporter permease n=1 Tax=Rhizobium meliloti RepID=UPI0002F0BE39
Sugar ABC transporter permease {ECO:0000313|EMBL:KGD98229.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
ABC transporter permease; K02026 multiple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_6728_curated_4
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2424..3485
DNA (1062bp) protein (354aa)
Oxidoreductase domain protein n=1 Tax=Rhizobium sp. RepID=L0NN25_RHISP
Oxidoreductase, Gfo/Idh/MocA family {ECO:0000313|EMBL:AHK42986.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_6728_curated_5
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3508..4509
DNA (1002bp) protein (334aa)
ATPase component of ABC-type sugar transporter n=1 Tax=Rhizobium sp. CF080 RepID=J2HNN9_9RHIZ
Glycerol-3-phosphate ABC transporter ATPase {ECO:0000313|EMBL:KGD98227.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
ABC transporter ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_6728_curated_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4517..5428
DNA (912bp) protein (304aa)
N-acetylglucosamine kinase n=1 Tax=Rhizobium leguminosarum RepID=UPI00036A5422
Transcriptional regulator/sugar kinase {ECO:0000313|EMBL:EJC81394.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
ROK family transcriptional regulator protein
SCNpilot_expt_1000_bf_scaffold_6728_curated_7
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5421..6149
DNA (729bp) protein (243aa)
Copper homeostasis protein CutC n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0G6B2_RHIML
Copper homeostasis protein CutC {ECO:0000256|HAMAP-Rule:MF_00795}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
cutC; Putative copper homeostasis protein
SCNpilot_expt_1000_bf_scaffold_6728_curated_8
unknown

Not on your lists

comp(6177..6734)
DNA (558bp) protein (186aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6728_curated_9
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6889..7371
DNA (483bp) protein (161aa)
Putative dehydrogenase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVP1_RHITR
putative dehydrogenase
Putative dehydrogenase {ECO:0000313|EMBL:AGB74190.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_6728_curated_10
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7368..8768
DNA (1401bp) protein (467aa)
Lactate dehydrogenase-like oxidoreductase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KUN8_MESAW
lactate dehydrogenase-like oxidoreductase
Lactate dehydrogenase-like oxidoreductase {ECO:0000313|EMBL:AGB47714.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_6728_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8753..9379)
DNA (627bp) protein (209aa)
ribokinase-like domain-containing protein; K00852 ribokinase [EC:2.7.1.15]
PfkB domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EI16_9RHIZ
Sugar kinase, ribokinase family {ECO:0000313|EMBL:EYR83014.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_6728_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9686..10888)
DNA (1203bp) protein (401aa)
Cystathionine gamma-synthase MetB {ECO:0000313|EMBL:EYR83015.1}; EC=2.5.1.48 {ECO:0000313|EMBL:EYR83015.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cystathionine gamma-synthase (EC:2.5.1.48); K01761 methionine-gamma-lyase [EC:4.4.1.11]
Cystathionine gamma-synthase MetB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BZX3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_6728_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10908..11399)
DNA (492bp) protein (164aa)
Binding-protein-dependent transport system inner membrane component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFE9_9RHIZ
ABC-type sugar transport system permease component {ECO:0000313|EMBL:EYR83016.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_6728_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11722..12615)
DNA (894bp) protein (298aa)
Binding-protein-dependent transport system inner membrane component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPS2_9RHIZ
ABC-type sugar transport system permease component {ECO:0000313|EMBL:EYR83017.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transport systems inner membrane component; K02025 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_6728_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12683..13936)
DNA (1254bp) protein (418aa)
Extracellular solute-binding protein family 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJZ5_9RHIZ
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:EYR83018.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_6728_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14160..14927
DNA (768bp) protein (256aa)
Transcriptional regulator, RpiR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EI13_9RHIZ
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:EYR83019.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RpiR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6728_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15001..15678
DNA (678bp) protein (226aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
N-(5'phosphoribosyl)anthranilate isomerase; K01817 phosphoribosylanthranilate isomerase [EC:5.3.1.24]
hypothetical protein n=1 Tax=Sinorhizobium medicae RepID=UPI0002FF1CFA
SCNpilot_expt_1000_bf_scaffold_6728_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15911..18313)
DNA (2403bp) protein (801aa)
Pyruvate dehydrogenase E1 component AceE {ECO:0000313|EMBL:EYR83865.1}; EC=1.2.4.1 {ECO:0000313|EMBL:EYR83865.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pyruvate dehydrogenase E1 component-like protein; K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1]
Pyruvate dehydrogenase E1 component AceE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW01_9RHIZ
SCNpilot_expt_1000_bf_scaffold_6728_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18618..18950
DNA (333bp) protein (111aa)
Bkd operon transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRD3_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EYR83866.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AsnC family transcriptional regulator
Displaying 19 items

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