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SCNpilot_expt_1000_bf_scaffold_1574_curated

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1574_curated_1
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1823
DNA (1821bp) protein (607aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
UPI0003CE2DBB related cluster n=1 Tax=unknown RepID=UPI0003CE2DBB
DNA/RNA helicase, superfamily I
SCNpilot_expt_1000_bf_scaffold_1574_curated_2
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2347..3060)
DNA (714bp) protein (238aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401, ECO:0000313|EMBL:CDN46471.1}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
peptide methionine sulfoxide reductase (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Rhizobium sp. CF080 RepID=J2KJ48_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1574_curated_3
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3348..3785)
DNA (438bp) protein (146aa)
cytochrome C biogenesis protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000381648D
Cytochrome c biogenesis protein {ECO:0000313|EMBL:EJJ27771.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
redoxin domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1574_curated_4
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3803..4294)
DNA (492bp) protein (164aa)
Methionine-R-sulfoxide reductase {ECO:0000313|EMBL:EUC00198.1}; EC=1.8.4.12 {ECO:0000313|EMBL:EUC00198.1};; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
methionine sulfoxide reductase B (EC:1.8.4.11); K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
Methionine-R-sulfoxide reductase n=1 Tax=Rhizobium sp. CF080 RepID=J2T4Z2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1574_curated_5
unknown

Not on your lists

4378..4485
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1574_curated_6
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4875..6395)
DNA (1521bp) protein (507aa)
phenylalanine/histidine ammonia-lyase; K01745 histidine ammonia-lyase [EC:4.3.1.3]
UPI0003CF1E0B related cluster n=1 Tax=unknown RepID=UPI0003CF1E0B
Histidine ammonia-lyase {ECO:0000313|EMBL:ESY86815.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
SCNpilot_expt_1000_bf_scaffold_1574_curated_7
unknown

Not on your lists

6754..8013
DNA (1260bp) protein (420aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1574_curated_8
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8368..9165
DNA (798bp) protein (266aa)
Transcriptional regulator, LysR family n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XTN6_PARAH
transcriptional regulator, LysR family
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGT10879.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_expt_1000_bf_scaffold_1574_curated_9
Pseudomonas resinovorans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9778..10248
DNA (471bp) protein (157aa)
Putative AsnC family transcriptional regulator n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6AR73_PSERE
putative AsnC family transcriptional regulator
Putative AsnC family transcriptional regulator {ECO:0000313|EMBL:BAN48368.1}; TaxID=1245471 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas resinovorans NBRC 106553.;"
SCNpilot_expt_1000_bf_scaffold_1574_curated_10
Burkholderia sp. 2002721687, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10395..11435
DNA (1041bp) protein (347aa)
capreomycidine hydroxylase n=1 Tax=Burkholderia thailandensis RepID=UPI00016AF0C6
Rieske [2Fe-2S] domain protein {ECO:0000313|EMBL:AJY43897.1}; TaxID=1468409 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. 2002721687.;"
iron-sulfur protein
SCNpilot_expt_1000_bf_scaffold_1574_curated_11
Burkholderia sp. 2002721687, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11671..12414
DNA (744bp) protein (248aa)
Putative oxidoreductase n=1 Tax=Burkholderia thailandensis MSMB43 RepID=I6A6E9_BURTH
2Fe-2S iron-sulfur cluster binding domain protein {ECO:0000313|EMBL:AJY44115.1}; TaxID=1468409 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. 2002721687.;"
putative oxygenase electron transfer component
SCNpilot_expt_1000_bf_scaffold_1574_curated_12
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12511..13299
DNA (789bp) protein (263aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JFW2_HYPSM
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CCB65471.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_1574_curated_13
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13338..14471
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JFW7_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB65476.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_1574_curated_14
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14475..15572
DNA (1098bp) protein (366aa)
potG; putrescine ABC transporter ATP-binding protein (EC:3.6.3.31)
Putrescine transporter, ATP-binding component of ABC transporter {ECO:0000313|EMBL:CCB65475.1}; EC=3.6.3.31 {ECO:0000313|EMBL:CCB65475.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Putrescine transporter, ATP-binding component of ABC transporter n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JFW6_HYPSM
SCNpilot_expt_1000_bf_scaffold_1574_curated_15
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15569..16426
DNA (858bp) protein (286aa)
Putative ABC spermidine/putrescine transporter, inner membrane subunit n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JFW5_HYPSM
spermidine/putrescine ABC transporter inner membrane protein
Putative ABC spermidine/putrescine transporter, inner membrane subunit {ECO:0000313|EMBL:CCB65474.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_1574_curated_16
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16423..17202
DNA (780bp) protein (260aa)
Polyamine transport protein PotC n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JFW4_HYPSM
potC; polyamine transport protein PotC
Polyamine transport protein PotC {ECO:0000313|EMBL:CCB65473.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_1574_curated_17
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17228..18118
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003691D63
LuxR family transcriptional regulator
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:AAV94897.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
SCNpilot_expt_1000_bf_scaffold_1574_curated_18
Pseudomonas resinovorans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18179..19222)
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6AIV3_PSERE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN48365.1}; TaxID=1245471 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas resinovorans NBRC 106553.;"
SCNpilot_expt_1000_bf_scaffold_1574_curated_19
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19247..20134)
DNA (888bp) protein (296aa)
polysaccharide deacetylase n=1 Tax=Sphingomonas wittichii RepID=UPI0002E10FB1
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:ABQ67295.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_1574_curated_20
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20178..20606)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J6L9_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB63408.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_1574_curated_21
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20766..22127
DNA (1362bp) protein (454aa)
UPI0003CED705 related cluster n=1 Tax=unknown RepID=UPI0003CED705
Glutamine synthetase {ECO:0000313|EMBL:EXL05397.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
glutamine synthetase
SCNpilot_expt_1000_bf_scaffold_1574_curated_22
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22163..23452
DNA (1290bp) protein (430aa)
FAD-dependent oxidoreductase n=1 Tax=Halomonas sp. KM-1 RepID=UPI000288F645
FAD-dependent oxidoreductase {ECO:0000313|EMBL:EZQ14238.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
FAD dependent oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1574_curated_23
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23621..24595
DNA (975bp) protein (325aa)
Magnesium and cobalt transport protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LYZ8_RHITR
magnesium and cobalt transport protein
Magnesium and cobalt transport protein {ECO:0000313|EMBL:AGB75330.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1574_curated_24
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24846..25103
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LPG5_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB73258.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1574_curated_25
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25128..26111)
DNA (984bp) protein (328aa)
Iron(3+)-hydroxamate import system permease protein fhuB n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AUI7_AZOBR
iron(3+)-hydroxamate import system permease protein fhuB (fragment)
Iron(3+)-hydroxamate import system permease protein fhuB {ECO:0000313|EMBL:CCD01596.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_expt_1000_bf_scaffold_1574_curated_26
unknown

Not on your lists

26465..26764
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1574_curated_27
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27083..27973)
DNA (891bp) protein (297aa)
Iron(III)-siderophore-binding periplasmic protein n=2 Tax=Azotobacter vinelandii RepID=C1DLD0_AZOVD
fhuD; iron(III)-siderophore-binding periplasmic protein
Iron(III)-siderophore-binding periplasmic protein {ECO:0000313|EMBL:ACO81123.1}; TaxID=322710 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii (strain DJ / ATCC BAA-1303).;"
SCNpilot_expt_1000_bf_scaffold_1574_curated_28
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27970..30405)
DNA (2436bp) protein (812aa)
TonB-dependent siderophore receptor n=1 Tax=Rhizobium sp. AP16 RepID=J2W8A8_9RHIZ
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EJK78870.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
fhuA; ferrichrome-iron transporter; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_1574_curated_29
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30553..31272)
DNA (720bp) protein (240aa)
Probable FecR, iron siderophore sensor protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X079_9BRAD
Probable FecR, iron siderophore sensor protein {ECO:0000313|EMBL:EAQ34361.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
FecR, iron siderophore sensor protein; K07165 transmembrane sensor
SCNpilot_expt_1000_bf_scaffold_1574_curated_30
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31580..32107)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XHG7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ERI14360.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
fecI; FecI-like protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Displaying items 1-30 of 35 in total

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