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SCNpilot_expt_1000_bf_scaffold_1475_curated

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1475_curated_1
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..937
DNA (936bp) protein (312aa)
30S ribosomal protein S1 n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UUE6_9RHIZ
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
rpsA; 30S ribosomal protein S1
SCNpilot_expt_1000_bf_scaffold_1475_curated_2
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1045..2862)
DNA (1818bp) protein (606aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2SD61_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDN50396.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1475_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3640..4524
DNA (885bp) protein (295aa)
putative nicotinate phosphoribosyltransferase; K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11]
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EV88_9RHIZ
Nicotinic acid phosphoribosyltransferase {ECO:0000313|EMBL:EYR84125.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1475_curated_4
unknown

Not on your lists

comp(4585..4902)
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1475_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5037..6311)
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UDX7_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:KDR88290.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1475_curated_6
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6404..7030)
DNA (627bp) protein (209aa)
Ribonuclease D n=1 Tax=Rhizobium sp. CF142 RepID=J1TFJ1_9RHIZ
Ribonuclease D {ECO:0000313|EMBL:EJJ30661.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
ribonuclease D
SCNpilot_expt_1000_bf_scaffold_1475_curated_7
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7102..7818)
DNA (717bp) protein (239aa)
Transcriptional regulator NanR n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LU49_RHITR
transcriptional regulator NanR
Transcriptional regulator NanR {ECO:0000313|EMBL:AGB74767.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1475_curated_8
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8056..9306
DNA (1251bp) protein (417aa)
rbcL; ribulose bisphosphate carboxylaseoxygenase; K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
ribulose bisphosphate carboxylase n=1 Tax=Rhizobium giardinii RepID=UPI00036E538A
Ribulose 1,5-bisphosphate carboxylase, large subunit {ECO:0000313|EMBL:EJK81273.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
RuBisCO type IV (not in cbb) Rose Kantor (11/19/15)
SCNpilot_expt_1000_bf_scaffold_1475_curated_9
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9308..10645
DNA (1338bp) protein (446aa)
Hrp-dependent type III effector protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3J1G9_9RHIZ
Hrp-dependent type III effector protein {ECO:0000313|EMBL:EMG52816.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
Hrp-dependent type III effector protein
SCNpilot_expt_1000_bf_scaffold_1475_curated_10
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10732..11559
DNA (828bp) protein (276aa)
Prephenate dehydrogenase n=1 Tax=Rhizobium sp. CF142 RepID=J1T7Q0_9RHIZ
Prephenate dehydrogenase {ECO:0000313|EMBL:EJJ27726.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1475_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11669..12610
DNA (942bp) protein (314aa)
D-ribose-binding periplasmic protein RbsB n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X4S9_RHIFR
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:EYR78668.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rbsB3; D-ribose-binding periplasmic protein RbsB
SCNpilot_expt_1000_bf_scaffold_1475_curated_12
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12686..13333
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D362_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHK46809.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1475_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13336..14880
DNA (1545bp) protein (515aa)
Ribose import ATP-binding protein RbsA {ECO:0000313|EMBL:EYR78670.1}; EC=3.6.3.17 {ECO:0000313|EMBL:EYR78670.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rbsA7; ribose import ATP-binding protein RbsA (EC:3.6.3.17)
Ribose import ATP-binding protein RbsA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYH7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1475_curated_14
unknown

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comp(14798..15148)
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1475_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15452..15931
DNA (480bp) protein (160aa)
Ribose transport system permease protein RbsC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVN4_9RHIZ
Ribose transport system permease protein RbsC {ECO:0000313|EMBL:EYR78671.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter; K10440 ribose transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1475_curated_16
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15931..16953
DNA (1023bp) protein (341aa)
oxidoreductase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003616D56
Oxidoreductase domain-containing protein {ECO:0000313|EMBL:EMG52810.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
GFO/IDH/MocA family oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1475_curated_17
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16950..18896
DNA (1947bp) protein (649aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J2L2K2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ27732.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1475_curated_18
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19093..20319)
DNA (1227bp) protein (409aa)
Amino acid ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FT77_9RHIZ
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESX82979.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1475_curated_19
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20345..20776)
DNA (432bp) protein (144aa)
UPI0003CE37BF related cluster n=1 Tax=unknown RepID=UPI0003CE37BF
Uncharacterized protein {ECO:0000313|EMBL:ESY64779.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1475_curated_20
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20776..21831)
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HC59_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE96302.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1475_curated_21
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21835..22188)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V2V7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN88205.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
TIGR04076 family protein
SCNpilot_expt_1000_bf_scaffold_1475_curated_22
Mesorhizobium sp. LSJC277A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22185..22979)
DNA (795bp) protein (265aa)
UPI0003CF7382 related cluster n=1 Tax=unknown RepID=UPI0003CF7382
GntR family transcriptional regulator {ECO:0000313|EMBL:ESW67994.1}; TaxID=1287334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC277A00.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1475_curated_23
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23084..23908
DNA (825bp) protein (275aa)
ABC transporter, ATP-binding protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UDF3_9RHIZ
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ENN88203.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1475_curated_24
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23905..24654
DNA (750bp) protein (250aa)
UPI0003CF9AAA related cluster n=1 Tax=unknown RepID=UPI0003CF9AAA
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
Branched-chain amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:ESY81259.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
SCNpilot_expt_1000_bf_scaffold_1475_curated_25
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24651..25556
DNA (906bp) protein (302aa)
ABC transporter permease n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FQU6_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:ESX82971.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
branched-chain amino acid ABC-type transport system, permease component
SCNpilot_expt_1000_bf_scaffold_1475_curated_26
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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25556..25825
DNA (270bp) protein (90aa)
ABC transporter, permease protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1A7_9RHOB
ABC transporter, permease protein {ECO:0000313|EMBL:EAV41292.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
ABC-type branched-chain amino acid transport system, permease component
SCNpilot_expt_1000_bf_scaffold_1475_curated_27
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25783..26520
DNA (738bp) protein (246aa)
ABC transporter, permease protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1A7_9RHOB
ABC transporter permease {ECO:0000313|EMBL:KGM35600.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1475_curated_28
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26557..28044
DNA (1488bp) protein (496aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q1I8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF57559.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1475_curated_29
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28151..29359
DNA (1209bp) protein (403aa)
Aspartate aminotransferase {ECO:0000313|EMBL:EPE94038.1}; EC=2.6.1.1 {ECO:0000313|EMBL:EPE94038.1};; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
Aspartate aminotransferase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I2Q0_9RHIZ
aspartate aminotransferase
SCNpilot_expt_1000_bf_scaffold_1475_curated_30
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29448..30245
DNA (798bp) protein (266aa)
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Rhizobium sp. CF080 RepID=J3CLA4_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGD87348.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein; K02030 polar amino acid transport system substrate-binding protein rbh
Displaying items 1-30 of 74 in total

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