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SCNpilot_expt_1000_bf_scaffold_4095_curated

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4095_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34..975)
DNA (942bp) protein (314aa)
Peptide ABC transporter permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5J5_9RHIZ
Peptide ABC transporter permease {ECO:0000313|EMBL:EYR81669.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4095_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(957..2141)
DNA (1185bp) protein (395aa)
Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN50_9RHIZ
Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase {ECO:0000313|EMBL:EYR81670.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase
SCNpilot_expt_1000_bf_scaffold_4095_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2285..3208
DNA (924bp) protein (308aa)
GntR family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFA8_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:EYR81671.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
bphR; GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4095_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3295..3798)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QG60_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83864.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_4095_curated_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3902..4288)
DNA (387bp) protein (129aa)
Conserved hypothetical exported protein n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MES2_RHIL3
hypothetical protein
Conserved hypothetical exported protein {ECO:0000313|EMBL:CAK08553.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_4095_curated_6
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4584..5447
DNA (864bp) protein (288aa)
Pantothenate synthetase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5YIN6_PARAH
pantothenate synthetase
Pantothenate synthetase {ECO:0000313|EMBL:AGT11338.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_expt_1000_bf_scaffold_4095_curated_7
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5458..6036
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XUZ6_PARAH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGT11339.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_expt_1000_bf_scaffold_4095_curated_8
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6081..7019)
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y6Y5_PARAH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGT11340.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_expt_1000_bf_scaffold_4095_curated_9
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7386..8330)
DNA (945bp) protein (315aa)
Transcriptional regulator, LysR family n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Z1M1_PARAH
transcriptional regulator, LysR family
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGT11341.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_expt_1000_bf_scaffold_4095_curated_10
unknown

Not on your lists

comp(8377..8760)
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4095_curated_11
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8962..9639)
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037A4679
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGT11343.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_expt_1000_bf_scaffold_4095_curated_12
Candidatus Puniceispirillum marinum, Candidatus Puniceispirillum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9651..10070)
DNA (420bp) protein (140aa)
endoribonuclease L-PSP superfamily protein (EC:1.4.3.4)
endoribonuclease n=1 Tax=Xanthobacteraceae RepID=UPI000371A4AE
Endoribonuclease L-PSP superfamily protein {ECO:0000313|EMBL:ADE38498.1}; TaxID=488538 species="Bacteria; Proteobacteria; Alphaproteobacteria; SAR116 cluster; Candidatus Puniceispirillum.;" source="Puniceispirillum marinum (strain IMCC1322).;"
SCNpilot_expt_1000_bf_scaffold_4095_curated_13
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10161..11681)
DNA (1521bp) protein (507aa)
Vinylacetyl-CoA delta-isomerase (EC:5.3.3.3); K00483 4-hydroxyphenylacetate-3-monooxygenase large chain [EC:1.14.14.9]
Probable 4-hydroxyphenylacetic hydroxylase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TSP7_9PROT
Probable 4-hydroxyphenylacetic hydroxylase {ECO:0000313|EMBL:EDP64301.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
SCNpilot_expt_1000_bf_scaffold_4095_curated_14
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11849..12256)
DNA (408bp) protein (136aa)
ABC-type branched-chain amino acid transport systems, periplasmic component n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Z1M6_PARAH
Branched-chain amino acid ABC transporter {ECO:0000313|EMBL:KGJ10610.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
ABC-type branched-chain amino acid transport systems, periplasmic component
SCNpilot_expt_1000_bf_scaffold_4095_curated_15
unknown

Not on your lists

12469..12780
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4095_curated_16
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13509..14120
DNA (612bp) protein (204aa)
Branched-chain amino acid ABC-type transport system, permease component n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y1H9_PARAH
ABC transporter permease {ECO:0000313|EMBL:KGJ10611.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
branched-chain amino acid ABC-type transport system, permease component
SCNpilot_expt_1000_bf_scaffold_4095_curated_17
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14124..15314
DNA (1191bp) protein (397aa)
Branched-chain amino acid ABC-type transport system, permease component n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5YIP6_PARAH
Branched-chain amino acid ABC transporter {ECO:0000313|EMBL:KGJ10612.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
branched-chain amino acid ABC-type transport system, permease component
SCNpilot_expt_1000_bf_scaffold_4095_curated_18
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15311..16102
DNA (792bp) protein (264aa)
ABC-type branched-chain amino acid transport systems, ATPase component n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XV03_PARAH
ABC-type branched-chain amino acid transport systems, ATPase component
Branched-chain amino acid ABC transporter {ECO:0000313|EMBL:KGJ10613.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
SCNpilot_expt_1000_bf_scaffold_4095_curated_19
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16095..16796
DNA (702bp) protein (234aa)
ABC-type branched-chain amino acid transport systems, ATPase component n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y6Z9_PARAH
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGJ10614.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
ABC-type branched-chain amino acid transport systems, ATPase component
SCNpilot_expt_1000_bf_scaffold_4095_curated_20
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16882..18306
DNA (1425bp) protein (475aa)
aspA; aspartate ammonia-lyase; K01744 aspartate ammonia-lyase [EC:4.3.1.1]
Fumarate lyase n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B6A0Q2_RHILW
Fumarate lyase {ECO:0000313|EMBL:ACI58186.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_4095_curated_21
unknown

Not on your lists

18460..18591
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4095_curated_22
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18588..18779
DNA (192bp) protein (64aa)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (EC:4.1.1.68)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46S57_CUPPJ
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_expt_1000_bf_scaffold_4095_curated_23
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18776..19267)
DNA (492bp) protein (164aa)
Electron transfer flavoprotein subunit alpha n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQS7_9RHIZ
Electron transfer flavoprotein subunit beta {ECO:0000313|EMBL:KJF70363.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
Electron transfer flavoprotein subunit alpha,mitochondrial Alpha-ETF; K03522 electron transfer flavoprotein alpha subunit
Displaying 23 items

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