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SCNpilot_cont_300_bf_scaffold_633_curated

Search features with annotation key words

Displaying items 1-30 of 128 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_633_curated_1
unknown

Not on your lists

comp(1..195)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_633_curated_2
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(395..1531)
DNA (1137bp) protein (379aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX06982.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
putative peptidase M24 id=24595189 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
putative peptidase M24
SCNpilot_cont_300_bf_scaffold_633_curated_3
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1647..2108)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IKH5_BEII9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB96455.1}; Flags: Precursor;; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_300_bf_scaffold_633_curated_4
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2306..2695
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036D19E2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH91160.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_300_bf_scaffold_633_curated_5
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2856..4715)
DNA (1860bp) protein (620aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000366AD22
Putative two-component hybrid sensor and regulator {ECO:0000313|EMBL:GAJ92281.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
fixL; two-component sensor histidine kinase
SCNpilot_cont_300_bf_scaffold_633_curated_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4876..5616)
DNA (741bp) protein (247aa)
Nitrogen fixation transcriptional regulator protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JNB1_AGRRK
fixKf; nitrogen fixation transcriptional regulator protein; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein
Nitrogen fixation transcriptional regulator protein {ECO:0000313|EMBL:ACM29042.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_300_bf_scaffold_633_curated_7
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5745..6521
DNA (777bp) protein (259aa)
Two-component response regulator protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JNB0_AGRRK
two-component response regulator protein
Transcriptional regulatory protein AruR {ECO:0000313|EMBL:KEA03449.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_cont_300_bf_scaffold_633_curated_8
unknown

Not on your lists

comp(6440..6922)
DNA (483bp) protein (161aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_633_curated_9
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7031..8374)
DNA (1344bp) protein (448aa)
FAD/FMN-dependent dehydrogenase n=1 Tax=Rhizobium sp. CF080 RepID=J3CVA7_9RHIZ
FAD linked oxidase domain protein {ECO:0000313|EMBL:CDN55765.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
putative oxidoreductase
SCNpilot_cont_300_bf_scaffold_633_curated_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8515..9273
DNA (759bp) protein (253aa)
Putative 3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Variovorax paradoxus B4 RepID=T1X833_VARPD
putative 3-oxoacyl-[acyl-carrier-protein] reductase
Putative 3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:AGU48713.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_633_curated_11
Paenibacillus beijingensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9303..9680
DNA (378bp) protein (126aa)
Uncharacterized protein {ECO:0000313|EMBL:AJY76136.1}; TaxID=1126833 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus beijingensis.;"
SCNpilot_cont_300_bf_scaffold_633_curated_12
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9708..10823
DNA (1116bp) protein (372aa)
Extracellular ligand-binding receptor n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137Z6_RHOPS
Uncharacterized protein {ECO:0000313|EMBL:KGY27115.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
extracellular ligand-binding receptor
SCNpilot_cont_300_bf_scaffold_633_curated_13
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

10838..11713
DNA (876bp) protein (292aa)
Inner-membrane translocator id=2037792 bin=GWB2_Chloroflexi_49_20 species=unknown genus=Acidiphilium taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
putative ABC transporter permease; K01997 branched-chain amino acid transport system permease protein
Tax=GWC2_Chloroflexi_49_37_curated
SCNpilot_cont_300_bf_scaffold_633_curated_14
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

11713..12684
DNA (972bp) protein (324aa)
Putative high-affinity branched-chain amino acid ABC transporter, permease protein id=1793831 bin=GWD2_Chloroflexi_49_16 species=Paenibacillus terrae genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
high-affinity branched-chain amino acid ABC transporter permease; K01998 branched-chain amino acid transport system permease protein
Tax=GWC2_Chloroflexi_49_37_curated
SCNpilot_cont_300_bf_scaffold_633_curated_15
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12659..13438
DNA (780bp) protein (260aa)
Monosaccharide-transporting ATPase id=4682845 bin=GWA2_Deltaproteo_65_63 species=Desulfitobacterium metallireducens genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
LivG; ABC-type branched-chain amino acid transport systems, ATPase component; K01995 branched-chain amino acid transport system ATP-binding protein
Tax=GWA2_Deltaproteobacteria_65_63_curated
SCNpilot_cont_300_bf_scaffold_633_curated_16
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13422..14135
DNA (714bp) protein (238aa)
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PPD7_9FIRM
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family {ECO:0000313|EMBL:EKP94782.1}; TaxID=867903 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter subterraneus DSM 13965.;"
amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_633_curated_17
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14152..14919
DNA (768bp) protein (256aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J2TK45_9RHIZ
Uxu operon transcriptional regulator {ECO:0000313|EMBL:CDN55764.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_633_curated_18
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15035..15940)
DNA (906bp) protein (302aa)
Putative uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F2C2_SPHCR
Uncharacterized protein {ECO:0000313|EMBL:KEQ53832.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_633_curated_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15995..16888)
DNA (894bp) protein (298aa)
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21D47_RHOPB
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ABD85689.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_300_bf_scaffold_633_curated_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16888..17655)
DNA (768bp) protein (256aa)
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21D46_RHOPB
ABC transporter-like protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
SCNpilot_cont_300_bf_scaffold_633_curated_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17660..18679)
DNA (1020bp) protein (340aa)
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21D45_RHOPB
inner-membrane translocator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
SCNpilot_cont_300_bf_scaffold_633_curated_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18651..19370)
DNA (720bp) protein (240aa)
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21D44_RHOPB
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ABD85692.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_300_bf_scaffold_633_curated_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19375..20511)
DNA (1137bp) protein (379aa)
Extracellular ligand-binding receptor n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21D43_RHOPB
extracellular ligand-binding receptor
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ABD85693.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_300_bf_scaffold_633_curated_24
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20586..21458)
DNA (873bp) protein (291aa)
IclR family transcriptional regulator n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YSS4_9PROT
Transcriptional regulator IclR {ECO:0000313|EMBL:GAN81572.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
IclR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_633_curated_25
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21620..22564
DNA (945bp) protein (315aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21D40_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD85696.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_300_bf_scaffold_633_curated_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22597..23523
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00036FBBA0
Uncharacterized protein {ECO:0000313|EMBL:KFC70061.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_633_curated_27
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23538..24179
DNA (642bp) protein (214aa)
NAD(P)H dehydrogenase (quinone); K00355 NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
NAD(P)H dehydrogenase (Quinone) {ECO:0000313|EMBL:ABD85688.1}; EC=1.6.5.2 {ECO:0000313|EMBL:ABD85688.1};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
NAD(P)H dehydrogenase (Quinone) n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21D48_RHOPB
SCNpilot_cont_300_bf_scaffold_633_curated_28
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24241..25011)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036280AD
Uncharacterized protein {ECO:0000313|EMBL:KGD96823.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
HpcH/HpaI aldolase
SCNpilot_cont_300_bf_scaffold_633_curated_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25769..27316
DNA (1548bp) protein (516aa)
ABC transporter periplasmic protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MCJ4_9RHIZ
ABC-type dipeptide transport system, periplasmic component {ECO:0000313|EMBL:KFC71665.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Twin-arginine translocation pathway signal
SCNpilot_cont_300_bf_scaffold_633_curated_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27344..28285
DNA (942bp) protein (314aa)
ABC transporter inner membrane protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LL44_9RHIZ
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:KFC71664.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease component
Displaying items 1-30 of 128 in total

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