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SCNpilot_cont_300_bf_scaffold_2362_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2362_curated_1
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..192
DNA (192bp) protein (64aa)
Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase n=1 Tax=Rhizobium sp. AP16 RepID=J2WGX4_9RHIZ
Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase {ECO:0000313|EMBL:EJK82088.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
acetyltransferase
SCNpilot_cont_300_bf_scaffold_2362_curated_2
Mesorhizobium sp. LNJC391B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(236..856)
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036277B0
Uncharacterized protein {ECO:0000313|EMBL:ESY20993.1}; TaxID=1287273 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC391B00.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2362_curated_3
Pseudovibrio sp. FO-BEG1, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1263..1778)
DNA (516bp) protein (172aa)
Type IV pilus assembly PilZ n=2 Tax=Pseudovibrio RepID=G8PR55_PSEUV
type IV pilus assembly PilZ
Type IV pilus assembly PilZ {ECO:0000313|EMBL:AEV38482.1}; TaxID=911045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. (strain FO-BEG1).;"
SCNpilot_cont_300_bf_scaffold_2362_curated_4
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1950..2570)
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036F589D
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EFO30602.1}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
SCNpilot_cont_300_bf_scaffold_2362_curated_5
unknown

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comp(3320..3592)
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2362_curated_6
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3835..4266
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000365D4A2
signal transduction protein with CBS domains
Uncharacterized protein {ECO:0000313|EMBL:ACS40049.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
SCNpilot_cont_300_bf_scaffold_2362_curated_7
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4284..4742)
DNA (459bp) protein (153aa)
phosphoribosyl-AMP cyclohydrolase; K01496 phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00103216};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037B0788
SCNpilot_cont_300_bf_scaffold_2362_curated_8
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4739..6001)
DNA (1263bp) protein (421aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00038233F0
SCNpilot_cont_300_bf_scaffold_2362_curated_9
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6119..6730)
DNA (612bp) protein (204aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
folE; GTP cyclohydrolase I; K01495 GTP cyclohydrolase I [EC:3.5.4.16]
GTP cyclohydrolase n=1 Tax=Kaistia granuli RepID=UPI00036F691F
SCNpilot_cont_300_bf_scaffold_2362_curated_10
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6828..7277
DNA (450bp) protein (150aa)
UPI0003CF270E related cluster n=1 Tax=unknown RepID=UPI0003CF270E
Nitrogen-fixing protein NifU {ECO:0000313|EMBL:ESW80196.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
nitrogen-fixing NifU domain-containing protein
SCNpilot_cont_300_bf_scaffold_2362_curated_11
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7286..7840
DNA (555bp) protein (185aa)
Probable RNA 2'-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00299}; EC=2.7.1.- {ECO:0000256|HAMAP-Rule:MF_00299};; TaxID=1408250 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
hypothetical protein; K07559 putative RNA 2'-phosphotransferase [EC:2.7.1.-]
hypothetical protein n=1 Tax=Xanthomonas arboricola RepID=UPI00037BDBF7
SCNpilot_cont_300_bf_scaffold_2362_curated_12
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7837..8205
DNA (369bp) protein (123aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B004_PARDP
Glyoxalase {ECO:0000313|EMBL:AKC87919.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_cont_300_bf_scaffold_2362_curated_13
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8259..8633
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003751CEA
hypothetical protein; K08998 hypothetical protein
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_2362_curated_14
unknown

Not on your lists

8745..8870
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2362_curated_15
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8940..9773
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035E5AF7
Putative beta-lactamase {ECO:0000313|EMBL:GAD50561.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
oxa9; beta-lactamase class D
SCNpilot_cont_300_bf_scaffold_2362_curated_16
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9982..11949
DNA (1968bp) protein (656aa)
thrS; threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
threonyl-tRNA synthetase n=1 Tax=Kaistia granuli RepID=UPI000369D178
SCNpilot_cont_300_bf_scaffold_2362_curated_17
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12017..13021)
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035DB96D
hypothetical protein
Bll5549 protein {ECO:0000313|EMBL:BAC50814.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_cont_300_bf_scaffold_2362_curated_18
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13229..13807
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036218AD
Nitroreductase {ECO:0000313|EMBL:AIQ88007.1}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
nitroreductase
SCNpilot_cont_300_bf_scaffold_2362_curated_19
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13901..15043
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J5PN74_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW11927.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2362_curated_20
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15051..15833)
DNA (783bp) protein (261aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
NAD(+) kinase; K00858 NAD+ kinase [EC:2.7.1.23]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003822EE2
SCNpilot_cont_300_bf_scaffold_2362_curated_21
Paracoccus sp. 361, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15914..16609)
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036BBF8F
5-carboxymethyl-2-hydroxymuconate isomerase {ECO:0000313|EMBL:KIX16592.1}; TaxID=1603292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 361.;"
fumarylacetoacetate (FAA) hydrolase
SCNpilot_cont_300_bf_scaffold_2362_curated_22
Pseudovibrio sp. JE062, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16779..17639
DNA (861bp) protein (287aa)
formyltetrahydrofolate deformylase; K01433 formyltetrahydrofolate deformylase [EC:3.5.1.10]
Formyltetrahydrofolate deformylase {ECO:0000256|HAMAP-Rule:MF_01927}; EC=3.5.1.10 {ECO:0000256|HAMAP-Rule:MF_01927};; Formyl-FH(4) hydrolase {ECO:0000256|HAMAP-Rule:MF_01927}; TaxID=439495 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. JE062.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036E846E
SCNpilot_cont_300_bf_scaffold_2362_curated_23
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17611..18543
DNA (933bp) protein (311aa)
methylenetetrahydrofolate dehydrogenase (EC:1.5.1.5 3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003747AA3
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
SCNpilot_cont_300_bf_scaffold_2362_curated_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18665..19291
DNA (627bp) protein (209aa)
DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Rhizobium sp. CF142 RepID=J1STV5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC64877.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
exonuclease
SCNpilot_cont_300_bf_scaffold_2362_curated_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19299..20126)
DNA (828bp) protein (276aa)
Glycosyltransferase n=1 Tax=Candidatus Symbiobacter mobilis CR RepID=U5N983_9BURK
glycosyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_cont_300_bf_scaffold_2362_curated_26
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20123..21442)
DNA (1320bp) protein (440aa)
Membrane protein involved in the export of O-antigen and teichoic acid n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QG69_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:KIE42099.1}; TaxID=1510391 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
membrane protein involved in the export of O-antigen and teichoic acid
Displaying 26 items

View Taxonomy