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SCNpilot_cont_300_bf_scaffold_2518_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2518_curated_1
unknown

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comp(1..201)
DNA (201bp) protein (67aa)
sugar ABC transporter n=1 Tax=Kaistia granuli RepID=UPI00035C4BB7
SCNpilot_cont_300_bf_scaffold_2518_curated_2
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(198..1145)
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000382BEEF
Sugar ABC transporter {ECO:0000313|EMBL:CCM78925.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
sugar ABC transporter; K02025 multiple sugar transport system permease protein
SCNpilot_cont_300_bf_scaffold_2518_curated_3
unknown

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2315..2932
DNA (618bp) protein (206aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2518_curated_4
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2938..4359
DNA (1422bp) protein (474aa)
Putative flavoprotein involved in K+ transport n=1 Tax=Rhizobium sp. CF142 RepID=J1TES5_9RHIZ
Putative flavoprotein involved in K+ transport {ECO:0000313|EMBL:EJJ30376.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
oxidoreductase
SCNpilot_cont_300_bf_scaffold_2518_curated_5
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4369..5409
DNA (1041bp) protein (347aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036FF2E4
Uncharacterized protein {ECO:0000313|EMBL:CDM61776.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2518_curated_6
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5424..6608
DNA (1185bp) protein (395aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037C818F
hydrolase
Hydrolase {ECO:0000313|EMBL:ACM36498.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_cont_300_bf_scaffold_2518_curated_7
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6717..7874
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000367F740
major facilitator superfamily, general substrate transporter
Major facilitator superfamily, general substrate transporter {ECO:0000313|EMBL:BAI76342.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_cont_300_bf_scaffold_2518_curated_8
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(7879..8214)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037268A9
NAD-dependent epimerase/dehydratase
Tax=GWA2_Bacteroidetes_40_15_curated
SCNpilot_cont_300_bf_scaffold_2518_curated_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8911..9693)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003694F29
NADH-dependent quinuclidinone reductase {ECO:0000313|PDB:3AK4}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
short chain dehydrogenase
SCNpilot_cont_300_bf_scaffold_2518_curated_10
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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9829..10677
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036C6875
DeoR family transcriptional regulator
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:ABC22066.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCNpilot_cont_300_bf_scaffold_2518_curated_11
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10726..11526
DNA (801bp) protein (267aa)
UPI0003CFFF71 related cluster n=1 Tax=unknown RepID=UPI0003CFFF71
Sgc region protein SgcQ {ECO:0000313|EMBL:ESZ30337.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
photosystem I assembly BtpA; K06971
SCNpilot_cont_300_bf_scaffold_2518_curated_12
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11950..12975
DNA (1026bp) protein (342aa)
carbohydrate kinase; K00854 xylulokinase [EC:2.7.1.17]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035F1578
Carbohydrate kinase, fggy {ECO:0000313|EMBL:EEX16144.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;"
SCNpilot_cont_300_bf_scaffold_2518_curated_13
unknown

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comp(13018..13242)
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000377BFD1
SCNpilot_cont_300_bf_scaffold_2518_curated_14
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13595..14002
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003687B02
DoxX family protein {ECO:0000313|EMBL:KJF65711.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
DoxX family protein
SCNpilot_cont_300_bf_scaffold_2518_curated_15
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13981..14178)
DNA (198bp) protein (66aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036C2588
Heavy metal transport/detoxification protein {ECO:0000313|EMBL:EKF40273.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
heavy metal transport/detoxification protein; K07213 copper chaperone
SCNpilot_cont_300_bf_scaffold_2518_curated_16
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15141..16550
DNA (1410bp) protein (470aa)
heavy-metal transporting P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
Heavy-metal transporting P-type ATPase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K630_AGRVS
Heavy-metal transporting P-type ATPase {ECO:0000313|EMBL:ACM40328.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_cont_300_bf_scaffold_2518_curated_17
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16547..16990
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000362DC2C
HTH-type transcriptional regulator HmrR {ECO:0000313|EMBL:KEC79117.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
MerR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2518_curated_18
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16977..17744)
DNA (768bp) protein (256aa)
oxidoreductase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036E162C
Oxidoreductase {ECO:0000313|EMBL:ESX67243.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_2518_curated_19
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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17885..18706
DNA (822bp) protein (274aa)
suhB; extragenic suppressor protein SuhB; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
Extragenic suppressor protein SuhB n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1F5_AGRVS
Uncharacterized protein {ECO:0000313|EMBL:KGM30230.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_cont_300_bf_scaffold_2518_curated_20
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18676..19551)
DNA (876bp) protein (292aa)
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Rhizobium sp. CF122 RepID=J2RIX6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGM33537.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2518_curated_21
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19624..20619)
DNA (996bp) protein (332aa)
oxidoreductase domain-containing protein; K00010 myo-inositol 2-dehydrogenase [EC:1.1.1.18]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037A7252
Oxidoreductase domain protein {ECO:0000313|EMBL:ABR63269.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_cont_300_bf_scaffold_2518_curated_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20645..21766)
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037EEEF3
Oxidoreductase domain protein {ECO:0000313|EMBL:KFC64840.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Myo-inositol 2-dehydrogenase
SCNpilot_cont_300_bf_scaffold_2518_curated_23
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21975..22817
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037CCE18
RpiR family transcriptional regulator {ECO:0000313|EMBL:KFL25444.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
putative transcriptional regulator of the myo-inositol catabolic operon
SCNpilot_cont_300_bf_scaffold_2518_curated_24
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23149..23538
DNA (390bp) protein (130aa)
hypothetical protein; K03338 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035D8E8B
Uncharacterized protein {ECO:0000313|EMBL:AEH84981.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
Displaying 24 items

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