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SCNpilot_cont_300_bf_scaffold_4598_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_4598_curated_1
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..431
DNA (429bp) protein (143aa)
ribose ABC transporter n=1 Tax=Patulibacter americanus RepID=UPI0003B46797
Uncharacterized protein {ECO:0000313|EMBL:EMZ28088.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
periplasmic binding protein/LacI transcriptional regulator; K02058 simple sugar transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_4598_curated_2
unknown

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1383..1622
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4598_curated_3
Mesorhizobium sp. LSHC426A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2028..3194)
DNA (1167bp) protein (389aa)
UPI0003CE740A related cluster n=1 Tax=unknown RepID=UPI0003CE740A
Uncharacterized protein {ECO:0000313|EMBL:ESX52490.1}; TaxID=1287298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC426A00.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_4598_curated_4
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3421..4446
DNA (1026bp) protein (342aa)
alcohol dehydrogenase; K13953 alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
Alcohol dehydrogenase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IJK5_AZOC5
Alcohol dehydrogenase {ECO:0000313|EMBL:BAF86318.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_4598_curated_5
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4529..5632
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TPJ8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE08386.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
conserved exported hypothetical protein
SCNpilot_cont_300_bf_scaffold_4598_curated_6
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5640..6407)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J2L724_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ28854.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
oxidoreductase
SCNpilot_cont_300_bf_scaffold_4598_curated_7
unknown

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comp(6347..7093)
DNA (747bp) protein (249aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4598_curated_8
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7230..7463
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003716D55
Uncharacterized protein {ECO:0000313|EMBL:KKC38092.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
putative LacI family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_4598_curated_9
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7964..8326)
DNA (363bp) protein (121aa)
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
SCNpilot_cont_300_bf_scaffold_4598_curated_10
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8634..9227
DNA (594bp) protein (198aa)
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:KKC38087.1}; EC=4.2.1.9 {ECO:0000313|EMBL:KKC38087.1};; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
dihydroxy-acid dehydratase; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxyacid dehydratase/phosphogluconate dehydratase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUV8_9RHIZ
SCNpilot_cont_300_bf_scaffold_4598_curated_11
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9240..9923
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003782251
Dimethylmenaquinone methyltransferase {ECO:0000313|EMBL:KKC38088.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
dimethylmenaquinone methyltransferase
SCNpilot_cont_300_bf_scaffold_4598_curated_12

Not on your lists

9923..10354
DNA (432bp) protein (144aa)
ABC transporter permease n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002626386
Marine sediment metagenome DNA, contig: S12H4_C01996 {ECO:0000313|EMBL:GAI66253.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein
Displaying 12 items

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