ggKbase home page

SCNpilot_cont_300_bf_scaffold_5461_curated

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_5461_curated_1
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..665
DNA (663bp) protein (221aa)
SAM dependent methyltransferase; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000360B984
SAM dependent methyltransferase {ECO:0000313|EMBL:ADZ72137.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_5461_curated_2
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

658..1497
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00038106E6
RNA methyltransferase {ECO:0000313|EMBL:EXL09659.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
TrmH family RNA methyltransferase; K03437 RNA methyltransferase, TrmH family
SCNpilot_cont_300_bf_scaffold_5461_curated_3
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1494..2000
DNA (507bp) protein (169aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000367D4FE
SCNpilot_cont_300_bf_scaffold_5461_curated_4
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2019..2831)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000379F958
Uracil phosphoribosyltransferase {ECO:0000313|EMBL:KFG67430.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_5461_curated_5
bacterium YEK0313, Bacteria

Not on your lists

comp(3234..4490)
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000376E814
GTP cyclohydrolase-2 {ECO:0000313|EMBL:CEJ15181.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_5461_curated_6
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4660..5979
DNA (1320bp) protein (440aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Caulobacter crescentus OR37 RepID=R0E6S0_CAUCE
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:ENZ81198.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
hypothetical protein rbh
SCNpilot_cont_300_bf_scaffold_5461_curated_7
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5995..7005)
DNA (1011bp) protein (337aa)
aldose 1-epimerase; K01785 aldose 1-epimerase [EC:5.1.3.3]
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003692803
SCNpilot_cont_300_bf_scaffold_5461_curated_8
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7074..7385)
DNA (312bp) protein (104aa)
phosphoglucomutase/phosphomannomutase subunit alpha/beta; K15778 phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
phosphoglucomutase n=1 Tax=Amorphus coralli RepID=UPI0003704576
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II {ECO:0000313|EMBL:ACB97136.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_300_bf_scaffold_5461_curated_9
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8574..9080)
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00036763A1
Putative protease {ECO:0000313|EMBL:AIQ88493.1}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
hypothetical protein; K06985 aspartyl protease family protein
SCNpilot_cont_300_bf_scaffold_5461_curated_10
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9279..10367
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TJ98_TISMK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK52836.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_300_bf_scaffold_5461_curated_11
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10691..11608)
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000365FA8B
Farnesyl-diphosphate synthase {ECO:0000313|EMBL:KDP71527.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
geranylgeranyl pyrophosphate synthase
SCNpilot_cont_300_bf_scaffold_5461_curated_12
Pseudovibrio sp. JE062, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11657..12070)
DNA (414bp) protein (138aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|HAMAP-Rule:MF_01676, ECO:0000256|SAAS:SAAS00087942}; EC=1.11.1.15 {ECO:0000256|HAMAP-Rule:MF_01676, ECO:0000256|SAAS:SAAS00087930};; Alkylhydroperoxidase AhpD {ECO:0000256|HAMAP-Rule:MF_01676}; TaxID=439495 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. JE062.;"
alkyl hydroperoxide reductase n=1 Tax=Kaistia granuli RepID=UPI000374C06A
ahpD; Alkylhydroperoxidase AhpD; K04756 alkyl hydroperoxide reductase subunit D
Displaying 12 items

View Taxonomy