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SCNpilot_cont_300_bf_scaffold_2188_curated

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2188_curated_1
unknown

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289..474
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2188_curated_2
Pseudomonas sp. GM41(2012), Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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625..909
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000364874E
Uncharacterized protein {ECO:0000313|EMBL:EUB72773.1}; TaxID=1144708 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM41(2012).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2188_curated_3
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(919..1845)
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JSC6_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM35619.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_cont_300_bf_scaffold_2188_curated_4
Thioclava dalianensis, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1845..2174)
DNA (330bp) protein (110aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SS66_NITWN
Uncharacterized protein {ECO:0000313|EMBL:KEP68520.1}; TaxID=1185766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava dalianensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2188_curated_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2178..3710)
DNA (1533bp) protein (511aa)
tail tape measure protein TP901 core region n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI00039D7BF3
Tail tape measure protein {ECO:0000313|EMBL:KDP73627.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
tail tape measure protein TP901 core region
SCNpilot_cont_300_bf_scaffold_2188_curated_6

Not on your lists

comp(4077..5627)
DNA (1551bp) protein (517aa)
Terminase n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QKV6_METTR
Uncharacterized protein {ECO:0000313|EMBL:KKN94444.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Phage terminase-like protein
SCNpilot_cont_300_bf_scaffold_2188_curated_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5611..6042)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003768921
Terminase {ECO:0000313|EMBL:KIZ43103.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
phage terminase, small subunit , P27
SCNpilot_cont_300_bf_scaffold_2188_curated_8
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6039..6359)
DNA (321bp) protein (107aa)
Phage head-tail adaptor, putative n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SS61_NITWN
phage head-tail adaptor
Phage head-tail adaptor, putative {ECO:0000313|EMBL:ABA04880.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_2188_curated_9
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6359..6769)
DNA (411bp) protein (137aa)
Uncharacterized protein n=2 Tax=Rhodobacter sphaeroides RepID=A3PGD6_RHOS1
Uncharacterized protein {ECO:0000313|EMBL:CEG09482.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2188_curated_10
Thioclava dalianensis, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6766..6987)
DNA (222bp) protein (74aa)
HK97 family phage protein n=1 Tax=Rhodobacter sphaeroides WS8N RepID=F5M1H9_RHOSH
Uncharacterized protein {ECO:0000313|EMBL:KEP68526.1}; TaxID=1185766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava dalianensis.;"
HK97 family phage protein
SCNpilot_cont_300_bf_scaffold_2188_curated_11
Mesorhizobium sp. L103C105A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7196..7513)
DNA (318bp) protein (106aa)
UPI0003D00BD8 related cluster n=1 Tax=unknown RepID=UPI0003D00BD8
DNA-packaging protein {ECO:0000313|EMBL:ESZ76292.1}; TaxID=1287074 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C105A0.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2188_curated_12
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7526..8299)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) RepID=A3PGD2_RHOS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABN75398.1}; TaxID=349101 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9).;"
SCNpilot_cont_300_bf_scaffold_2188_curated_13
unknown

Not on your lists

8399..8758
DNA (360bp) protein (120aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2188_curated_14
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8665..9048)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKG9_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63278.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2188_curated_15
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9117..10274)
DNA (1158bp) protein (386aa)
Phage major capsid protein, HK97 family n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4WS92_RHOS5
HK97 family phage major capsid protein
Phage major capsid protein, HK97 family {ECO:0000313|EMBL:ABP70256.1}; TaxID=349102 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3).;"
SCNpilot_cont_300_bf_scaffold_2188_curated_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10276..10779)
DNA (504bp) protein (168aa)
Phage prohead protease, HK97 family n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4WS91_RHOS5
Phage prohead protease, HK97 family {ECO:0000313|EMBL:CEG09475.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
HK97 family phage prohead protease
SCNpilot_cont_300_bf_scaffold_2188_curated_17
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10779..11042)
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489BB7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH51131.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_2188_curated_18
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11045..11431)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4WS90_RHOS5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP70254.1}; TaxID=349102 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3).;"
SCNpilot_cont_300_bf_scaffold_2188_curated_19
Mesorhizobium sp. L103C105A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11431..12642)
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036F10B7
Portal protein {ECO:0000313|EMBL:ESZ76297.1}; TaxID=1287074 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C105A0.;"
phage lambdaBa02, DNA replication protein
Displaying 19 items

View Taxonomy