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SCNpilot_cont_300_bf_scaffold_2504_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2504_curated_1
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..323)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000361FF26
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:KFB11107.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
putrescine ABC transporter permease; K11075 putrescine transport system permease protein
SCNpilot_cont_300_bf_scaffold_2504_curated_2
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(373..1524)
DNA (1152bp) protein (384aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003754D7D
potG; Putrescine ABC transporter permease/ATPase; K11076 putrescine transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_2504_curated_3
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1597..2676)
DNA (1080bp) protein (360aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036DBFA2
potF; putrescine ABC transporter periplasmic-binding protein; K11073 putrescine transport system substrate-binding protein
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_cont_300_bf_scaffold_2504_curated_4
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3235..4221
DNA (987bp) protein (329aa)
glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003787B1A
Glutamine synthetase family protein {ECO:0000313|EMBL:BAF90440.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_2504_curated_5
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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4301..5689
DNA (1389bp) protein (463aa)
class III aminotransferase; K12256 putrescine aminotransferase [EC:2.6.1.-]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000378F10A
Aminotransferase, class III superfamily {ECO:0000313|EMBL:ADZ71948.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_2504_curated_6
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5871..6593
DNA (723bp) protein (241aa)
FAD dependent oxidoreductase; K09471 gamma-glutamylputrescine oxidase [EC:1.4.3.-]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000371FD36
FAD dependent oxidoreductase {ECO:0000313|EMBL:ADH87666.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_300_bf_scaffold_2504_curated_7
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7666..8589)
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003717B69
LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ADH89713.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_300_bf_scaffold_2504_curated_8
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8582..12019)
DNA (3438bp) protein (1146aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036075CF
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain-containing protein
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein {ECO:0000313|EMBL:ADZ68846.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_2504_curated_9
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12290..13585
DNA (1296bp) protein (432aa)
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Kaistia granuli RepID=UPI0003711812
urea ABC transporter urea binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESZ23878.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
SCNpilot_cont_300_bf_scaffold_2504_curated_10
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13718..14917
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000362974C
short-chain amide or branched-chain amino acid ABC transporter; permease component
Short-chain amide or branched-chain amino acid ABC transporter permease component {ECO:0000313|EMBL:CCC98896.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Displaying 10 items

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