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SCNpilot_cont_300_bf_scaffold_2495_curated

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2495_curated_1
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1029
DNA (1029bp) protein (343aa)
glutamate--cysteine ligase; K01919 glutamate--cysteine ligase [EC:6.3.2.2]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003664425
Glutamate-cysteine ligase {ECO:0000313|EMBL:BAF88965.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_2495_curated_2
Pseudovibrio sp. JE062, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1075..1842
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000361DBA9
UspA domain-containing protein
UspA {ECO:0000313|EMBL:EEA92484.1}; TaxID=439495 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. JE062.;"
SCNpilot_cont_300_bf_scaffold_2495_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1930..2616
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037133CC
Uncharacterized protein {ECO:0000313|EMBL:EYR80102.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2495_curated_4
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2733..3065)
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000372E420
Uncharacterized protein {ECO:0000313|EMBL:CDX33408.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
SCNpilot_cont_300_bf_scaffold_2495_curated_5
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3368..4249
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036ECB37
LysR substrate binding domain protein {ECO:0000313|EMBL:EEE47073.1}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
HTH-type transcriptional regulator dgdR
SCNpilot_cont_300_bf_scaffold_2495_curated_6
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4246..4875
DNA (630bp) protein (210aa)
Chloramphenicol phosphotransferase protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UFZ8_9RHIZ
Chloramphenicol phosphotransferase protein {ECO:0000313|EMBL:ENN89068.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
chloramphenicol phosphotransferase family protein
SCNpilot_cont_300_bf_scaffold_2495_curated_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4894..5274)
DNA (381bp) protein (127aa)
Putative membrane protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0BE49_RHILV
Putative membrane protein {ECO:0000313|EMBL:EJC67982.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
DoxD family transmembrane protein
SCNpilot_cont_300_bf_scaffold_2495_curated_8
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5304..6233)
DNA (930bp) protein (310aa)
Glutaminase {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476}; EC=3.5.1.2 {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476};; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
glutaminase (EC:3.5.1.2); K01425 glutaminase [EC:3.5.1.2]
Glutaminase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y604_9RHIZ
SCNpilot_cont_300_bf_scaffold_2495_curated_9
bacterium YEK0313, Bacteria

Not on your lists

comp(6328..9264)
DNA (2937bp) protein (979aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003795621
PAS domain-containing protein
SCNpilot_cont_300_bf_scaffold_2495_curated_10
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10112..10618
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000361D9F9
Uncharacterized protein {ECO:0000313|EMBL:EAV40475.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
phasin family protein
SCNpilot_cont_300_bf_scaffold_2495_curated_11
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11016..11561)
DNA (546bp) protein (182aa)
Transcriptional regulator, AraC family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZYQ2_STAND
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ADH91021.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_300_bf_scaffold_2495_curated_12
Curtobacterium flaccumfaciens, Curtobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11949..12791
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Curtobacterium flaccumfaciens RepID=UPI000366B40E
GntR family transcriptional regulator {ECO:0000313|EMBL:EYT66492.1}; TaxID=1292022 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Curtobacterium.;" source="Curtobacterium flaccumfaciens UCD-AKU.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2495_curated_13
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12788..14290
DNA (1503bp) protein (501aa)
sugar ABC transporter ATP-binding protein; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
sugar ABC transporter ATPase n=1 Tax=Kaistia granuli RepID=UPI0003665520
Putative sugar ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CAL80354.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
SCNpilot_cont_300_bf_scaffold_2495_curated_14
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14305..15372
DNA (1068bp) protein (356aa)
ABC transporter permease n=1 Tax=Kaistia granuli RepID=UPI0003657EAC
rbsc1; Autoinducer 2 import system permease protein lsrC AI-2 import system permease protein lsrC; K10440 ribose transport system permease protein
Sugar ABC transporter permease {ECO:0000313|EMBL:CCE99456.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_cont_300_bf_scaffold_2495_curated_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15395..16498
DNA (1104bp) protein (368aa)
Putative sugar ABC transporter, substrate-binding protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CS12_VARPS
sugar ABC transporter substrate-binding protein; K10439 ribose transport system substrate-binding protein
Putative sugar ABC transporter, substrate-binding protein {ECO:0000313|EMBL:ACS19963.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_2495_curated_16
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16803..17555)
DNA (753bp) protein (251aa)
Transcriptional regulator n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QAL3_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:KKC33314.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2495_curated_17
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17552..18634)
DNA (1083bp) protein (361aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F6F9_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:KKB77802.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
ribose ABC transporter permease; K02057 simple sugar transport system permease protein
SCNpilot_cont_300_bf_scaffold_2495_curated_18
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18631..19335)
DNA (705bp) protein (235aa)
Ribose ABC transporter permease n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QIG2_9RHIZ
Putative sugar ABC transport system, permease protein YtfT {ECO:0000313|EMBL:KFC69712.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
putative sugar ABC transport system, permease protein YtfT; K02057 simple sugar transport system permease protein
SCNpilot_cont_300_bf_scaffold_2495_curated_19
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19577..21157)
DNA (1581bp) protein (527aa)
ABC transporter nucleotide binding/ATPase (ribose); K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
ABC transporter nucleotide binding/ATPase (Ribose) n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QZ81_9RHIZ
Putative sugar ABC transport system, ATP-binding protein YtfR {ECO:0000313|EMBL:KFC69711.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_cont_300_bf_scaffold_2495_curated_20
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21296..22153)
DNA (858bp) protein (286aa)
ABC transporter substrate binding protein (Ribose) n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PJ46_9RHIZ
ABC transporter substrate binding protein (Ribose) {ECO:0000313|EMBL:EKF60913.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
ABC transporter substrate binding protein (ribose); K02058 simple sugar transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_2495_curated_21
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22375..23277)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FAD8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EHS50212.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2495_curated_22
Streptomyces himastatinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23387..24205)
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000364D377
Glycerol-3-phosphate regulon repressor {ECO:0000313|EMBL:EFL28657.1}; TaxID=457427 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces himastatinicus ATCC 53653.;"
transcriptional regulator of sugar metabolism
SCNpilot_cont_300_bf_scaffold_2495_curated_23
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24213..25151)
DNA (939bp) protein (313aa)
Glucokinase protein {ECO:0000313|EMBL:AJD44545.1}; EC=2.7.1.2 {ECO:0000313|EMBL:AJD44545.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
glucokinase n=1 Tax=Rhizobium mongolense RepID=UPI0003B6FDC9
transcriptional regulator/sugar kinase
SCNpilot_cont_300_bf_scaffold_2495_curated_24
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25154..25879)
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036A172A
D-allulose-6-phosphate 3-epimerase {ECO:0000313|EMBL:ESW74211.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
ribulose-5-phosphate 3-epimerase
SCNpilot_cont_300_bf_scaffold_2495_curated_25
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25876..26703)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000380130F
hypothetical protein rbh
Mlr7232 protein {ECO:0000313|EMBL:BAB53381.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_300_bf_scaffold_2495_curated_26
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26700..27527)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036D549B
Epimerase {ECO:0000313|EMBL:ESY75604.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
xylose isomerase domain-containing protein
SCNpilot_cont_300_bf_scaffold_2495_curated_27
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27527..28603)
DNA (1077bp) protein (359aa)
oxidoreductase n=1 Tax=Kaistia granuli RepID=UPI0003611E9F
glucose-fructose oxidoreductase rbh
Mlr7229 protein {ECO:0000313|EMBL:BAB53379.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_300_bf_scaffold_2495_curated_28
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28623..28943)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003765096
Myo-inositol catabolism protein {ECO:0000313|EMBL:ESZ21952.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
xylose isomerase-like enzyme
SCNpilot_cont_300_bf_scaffold_2495_curated_29
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29924..30919
DNA (996bp) protein (332aa)
LacI family transcriptional regulator n=1 Tax=Rhizobium loti RepID=UPI00037E281D
Periplasmic binding s and sugar binding domain of the LacI family protein {ECO:0000313|EMBL:AID31614.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
periplasmic binding protein/LacI transcriptional regulator; K10439 ribose transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_2495_curated_30
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30916..31602
DNA (687bp) protein (229aa)
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:CCV11187.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CCV11187.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Monosaccharide-transporting ATPase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EJV2_9RHIZ
inner-membrane translocator; K10440 ribose transport system permease protein
Displaying 30 items

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